Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20960 362 / 3e-114 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT2G42270 335 / 5e-105 U5 small nuclear ribonucleoprotein helicase (.1) AT5G61140 115 / 1e-28 U5 small nuclear ribonucleoprotein helicase (.1.2) AT1G79940 58 / 2e-09 ATERDJ2A DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) AT3G28870 51 / 4e-07 unknown protein AT4G21180 47 / 1e-05 ATERDJ2B DnaJ / Sec63 Brl domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016048 [exp] 399 / 7e-127 AT1G20960 3558 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10025168 [exp] 398 / 7e-127 AT1G20960 3286 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10040524 [exp] 115 / 2e-28 AT5G61140 3299 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Lus10029613 [exp] 113 / 5e-28 AT2G33840 599 / 0.0 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1) Lus10027536 [exp] 59 / 1e-09 AT1G79940 1087 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Lus10039293 [exp] 59 / 2e-09 AT1G79940 1086 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Lus10042628 [exp] 51 / 6e-07 AT1G20960 921 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G095500 [exp] 368 / 3e-116 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.012G097300 [exp] 340 / 1e-106 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.015G056501 [exp] 108 / 3e-26 AT5G61140 3496 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Potri.004G072200 [exp] 59 / 2e-09 AT1G79940 1087 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Potri.017G148800 [exp] 50 / 1e-06 AT1G79940 1062 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Potri.002G002600 [exp] 39 / 0.0003 AT1G20960 0 / 1 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02889 [flax] [poplar] Sec63 Sec63 Brl domain
Representative CDS sequence Show only first row Show all	>Lus10042629 pacid=23181839 polypeptide=Lus10042629 locus=Lus10042629.g ID=Lus10042629.BGIv1.0 annot-version=v1.0 ATGAAGGGTATTCTCGAGATTCTGGCTTCTGCATCGGAGTATGGAAAGCTTGTGGTACGACCCAGAGAGGAGGAGAAACTCCGAAGGCTGCTGAATCACC AGAGATTCTCGATTGAGAATACGAGATTCAATGACCCGCAGGTGAAGGTCAATGTTCTGCTCCAAGCTCATTTTTTGAGGCGGACAGTTGGCGGGATTCT GGCGCATGACCAGCGAGACGTTCTCCTTTCCGCTGGCCGATTGGTTCGATCGATGGTGGATGTCATATCGAGTAACGGTTGGTTGAGCCTCGCGCTTCTA GCGATGGAAGTGAGCCAGATGGTGACGCAAGGGATGTGGGAGCGGGATTCGGTGCTGATGCAGCTTCTGCACTTTACAAGGGAGTTGGCTGAGAAGTGTC GGGAGAAGAAGATAGAGACGGTATTTGATTTGGTGGGGATGGAGGATGACGAGAGGTGCGAGCTTCTGCAGATGTCCGATGCGGAGTTGCTGGACGTAGC GAAGTTGTGTAATCAGTACCCGAACATCGATGTGGCCTATGAGGTGGTGGGCGCTGAGAATGAGGTGGCCATGGAGGTGGTGCTGGAGAGGGATACTGAA GCAAGGACGGAGATGCTGAGGTGTTCGAAGGAGAAGGAAGAAGGATGGTGGGTGGTGGTGGGGGACAGCGAGACGAATCAGCTGGTGGCGATCAAGAGGG TGTCTTTGGTGAGGAAGGTGAAAGTGAAGCTTGAATTTGCGGCGCCTGCTGGACAGAGGAGAAGGTACACACTATACTTGATGTGCGATTCTTATATGGG TTGCGACCAAGAGTATGGTTTTACTATCGATGTCGGTGCAGCATCAGAGAAGATATCGAAAAATTCAATAGTAGTAGCCTAG
AA sequence Show only first row Show all	>Lus10042629 pacid=23181839 polypeptide=Lus10042629 locus=Lus10042629.g ID=Lus10042629.BGIv1.0 annot-version=v1.0 MKGILEILASASEYGKLVVRPREEEKLRRLLNHQRFSIENTRFNDPQVKVNVLLQAHFLRRTVGGILAHDQRDVLLSAGRLVRSMVDVISSNGWLSLALL AMEVSQMVTQGMWERDSVLMQLLHFTRELAEKCREKKIETVFDLVGMEDDERCELLQMSDAELLDVAKLCNQYPNIDVAYEVVGAENEVAMEVVLERDTE ARTEMLRCSKEKEEGWWVVVGDSETNQLVAIKRVSLVRKVKVKLEFAAPAGQRRRYTLYLMCDSYMGCDQEYGFTIDVGAASEKISKNSIVVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10042629 [exp]	0	1
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10011335 [exp]	19.2	0.6452
AT3G24060			Plant self-incompatibility pro...		Lus10033675 [exp]	25.9	0.5165
AT5G63905			unknown protein		Lus10018677 [exp]	27.0	0.6368
AT3G27250			unknown protein		Lus10014610 [exp]	37.5	0.6026
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020706 [exp]	39.7	0.5804
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10040738 [exp]	55.7	0.5923
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10017201 [exp]	96.9	0.5456
					Lus10028987 [exp]	103.5	0.5556
					Lus10004635 [exp]	108.7	0.5230
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10027432 [exp]	120.2	0.5221

Compare expression of checked genes

Lus10042629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.