Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03070 390 / 5e-139 Bax inhibitor-1 family protein (.1.2) AT4G02690 362 / 5e-128 Bax inhibitor-1 family protein (.1) AT3G63310 362 / 5e-128 BIL4 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1) AT4G14730 263 / 8e-89 Bax inhibitor-1 family protein (.1) AT4G15470 243 / 5e-81 Bax inhibitor-1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022085 [exp] 466 / 4e-169 AT1G03070 406 / 3e-145 Bax inhibitor-1 family protein (.1.2) Lus10004077 [exp] 374 / 1e-132 AT1G03070 404 / 2e-144 Bax inhibitor-1 family protein (.1.2) Lus10041240 [exp] 233 / 5e-77 AT4G15470 369 / 2e-130 Bax inhibitor-1 family protein (.1) Lus10021950 [exp] 166 / 5e-51 AT4G15470 288 / 8e-99 Bax inhibitor-1 family protein (.1) Lus10004078 [exp] 68 / 2e-13 AT4G02690 85 / 2e-19 Bax inhibitor-1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G049000 [exp] 376 / 2e-133 AT1G03070 393 / 2e-140 Bax inhibitor-1 family protein (.1.2) Potri.005G214000 [exp] 368 / 2e-130 AT1G03070 310 / 2e-107 Bax inhibitor-1 family protein (.1.2) Potri.008G157100 [exp] 290 / 1e-99 AT3G63310 243 / 4e-81 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1) Potri.005G213900 [exp] 281 / 3e-96 AT3G63310 259 / 9e-88 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1) Potri.010G028900 [exp] 238 / 3e-79 AT4G15470 348 / 2e-122 Bax inhibitor-1 family protein (.1) Potri.008G199200 [exp] 234 / 1e-77 AT4G15470 348 / 3e-122 Bax inhibitor-1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0453 [flax] [poplar] Apoptosis-Inhib PF01027 [flax] [poplar] Bax1-I Inhibitor of apoptosis-promoting Bax1
Representative CDS sequence Show only first row Show all	>Lus10042631 pacid=23181853 polypeptide=Lus10042631 locus=Lus10042631.g ID=Lus10042631.BGIv1.0 annot-version=v1.0 ATGTGGCCGCCGCAGCCGTTCCAGAAGAACAACGACGTGGAGACTGGGGGCTCATCCTCCAGGCCTCTCTACCCGATGATGCTCGAGAGCCCCGAGCTCC GCTGGTCTTTCATCAGGAAAATCTACTCCATCATCACCATCCAGTTGCTCGCTACAGTCGCCGTCGCCGCCACTGTCGTATCCGTACGCCCGATCGCGGT CTTCTTCGTCACTACCTCCGCCGGATTGGCTCTTTACATCGTCCTCATCATCACCCCCTTCATCGTTTTGTGTCCGCTCTATTACTATCACCAGAAGCAT CCAGTGAATTACTTGCTACTAGGGATTTTCACAGTCGCGATTTCCTTTGCCGTGGGATTGAGCTGTGCATTCACAAGCGGGAAAGTAATCCTCGAAGCAG CGATCCTGACAGCAGTTGTGGTTGTGGGTCTAACCCTCTTCACATTCTGGGCGGCAAAGAAAGGCTATGATTTCAATTTCCTTGGACCCTTTTTGTTCGG TGCTATTCTTGTCCTCATGGCGTTTGCTATAATCCAGATCTTCTTCCCGTTGGGTAAGCTCTCTACGATGATCTACGGTTGCCTGGCTGCAATCATCTTC TGTGGTTACATCGTGTACGATACAGATAACCTCATCAAGCGCTACACTTACGATGAGTACATTTGGGCTGCGGTGTCTCTCTACTTGGATATCATCAACT TGTTCCTTTCGCTGTTGACCATATTCAGGGCTGCTGATTCGTAA
AA sequence Show only first row Show all	>Lus10042631 pacid=23181853 polypeptide=Lus10042631 locus=Lus10042631.g ID=Lus10042631.BGIv1.0 annot-version=v1.0 MWPPQPFQKNNDVETGGSSSRPLYPMMLESPELRWSFIRKIYSIITIQLLATVAVAATVVSVRPIAVFFVTTSAGLALYIVLIITPFIVLCPLYYYHQKH PVNYLLLGIFTVAISFAVGLSCAFTSGKVILEAAILTAVVVVGLTLFTFWAAKKGYDFNFLGPFLFGAILVLMAFAIIQIFFPLGKLSTMIYGCLAAIIF CGYIVYDTDNLIKRYTYDEYIWAAVSLYLDIINLFLSLLTIFRAADS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03070			Bax inhibitor-1 family protein...		Lus10042631 [exp]	0	1
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10017458 [exp]	3.5	0.8675
AT5G35320			unknown protein		Lus10027608 [exp]	4.9	0.8459
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10024680 [exp]	8.1	0.8232
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10043430 [exp]	9.1	0.7892
AT3G07090			PPPDE putative thiol peptidase...		Lus10025931 [exp]	11.0	0.8347
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10017404 [exp]	11.2	0.8484
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10011006 [exp]	12.0	0.8410
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10004712 [exp]	12.7	0.8383
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10001719 [exp]	17.7	0.8172
AT2G20560			DNAJ heat shock family protein...		Lus10017687 [exp]	19.2	0.8293

Compare expression of checked genes

Lus10042631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.