Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04810 645 / 0 ATNEK2 NIMA-related kinase 2 (.1.2) AT1G54510 622 / 0 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT3G63280 564 / 0 ATNEK4 NIMA-related kinase 4 (.1.2) AT5G28290 512 / 1e-176 ATNEK3 NIMA-related kinase 3 (.1) AT3G44200 439 / 3e-143 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G20860 413 / 8e-140 ATNEK5 NIMA-related kinase 5 (.1) AT3G12200 314 / 2e-99 ATNEK7 NIMA-related kinase 7 (.1.2) AT1G53570 147 / 2e-37 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G50240 145 / 4e-36 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT1G69220 139 / 3e-34 SIK1 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001783 [exp] 664 / 0 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10020244 [exp] 661 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10009186 [exp] 636 / 0 AT1G54510 695 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10015928 [exp] 633 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10013338 [exp] 426 / 7e-138 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10001857 [exp] 425 / 8e-138 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10040499 [exp] 411 / 4e-136 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 405 / 4e-130 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10031834 [exp] 371 / 5e-123 AT3G20860 563 / 0.0 NIMA-related kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G049400 [exp] 751 / 0 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.005G051600 [exp] 739 / 0 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.013G039000 [exp] 723 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.016G051900 [exp] 435 / 2e-145 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.006G056300 [exp] 434 / 1e-144 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.001G218100 [exp] 439 / 6e-143 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.009G020100 [exp] 433 / 7e-141 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.001G018700 [exp] 411 / 3e-137 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.003G205400 [exp] 407 / 2e-135 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.019G052500 [exp] 145 / 4e-36 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042632 pacid=23181709 polypeptide=Lus10042632 locus=Lus10042632.g ID=Lus10042632.BGIv1.0 annot-version=v1.0 ATGGAGCAGTATGAAGTTCTGGAGCAGATTGGGAAAGGTTCTTTTGGTTCTGCTCTTCTAGTGAGGCATAGACACGAGAAGAAGAAGTATGTACTGAAGA AAATCAGACTTGCTCGTCAAACTGACAGAGCCCGTAGGTCTGCACACCAAGAGATGGACCTTCTATCTAAAGTAAGAAATCCGTATATTGTTGAGTACAA GGACTCCTGGGTGGAAAAGGGCTGCTATGTGTGCATTGTTATAGGGTACTGCGAAGGCGGAGACATGTCGGACGCTGTAAAGAGGGCTAATGGCGTTCAT TTTTCTGAAGAGAAGCTCTGCAAGTGGCTAGTTCAGCTCTTGGTGGCACTTGATTATTTGCATGCCAACCATATACTTCACCGGGATGTAAAATGCTCAA ATATATTTCTGACGAAAGACCAGGACATTCGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCTTCTATTGTTGGGACTCC TAGTTACATGTGCCCTGAGCTTCTCGCTGATATTCCTTATGGTTCGAAGTCTGACATTTGGTCTTTAGGATGCTGCATATATGAAATGTCTGCTCACAAG CCAGCATTTAAGGCATTTGATATTCAAGCATTGATCAACAAAATAAATAAGTCTATCATAGCTCCTCTCCCTACAGTCTACTCTGCATCATTCCGGGGTC TTGTCAAGAGCATGCTGCGAAAGAATCCAGAGCTTAGACCAAGCGCGGCAGAGCTGCTTAGTCACACACATCTTCAACCTTATGTCTTAAATGCTCACCT GAAGTTGAACAACCCAAGAAGGACGACTCTTCCCGCCCGCTGGTCCGATTCCAACTTCGTCAAAAAGACTAGATTCGTGGAAGCGGATTCCTTTGTCACC TGCAGAGAAAAGAGGCTATCATACAGCAACGACAGGAGCTTAAACCCTAGTATTTCAGAAGCAGAACTAGACTCCGGTTGTTCTTCACAAGGAGTATCTC AATCTCCAAGGGTTCAGAATCAGAATTACAGAGCCAAGACTCCTAGACCTGTCCCTGCAAAATGCTCTACTCCAAGGAGACTCTCAACCACACCAGCAAA GCATCCAGTGACATGCACTAAGGGAAACAGAACTTCTCACCCTACAAGAAGAGCTTCTCTTCCACTCCCCTTAAAGAACTCGGCTGGAGATACTCCTCAT ACAGCCAAACTACGTCCCCTCCGCAACCTAGAATCACCAGATGTATCAGTAAACGCACCGAGGATGGACAAGATGGCCGAGTTCCCTTTATCAGTCTCCT CATCAGGATCTCTTGTCCCGATTCGCGGAACTCTGTCGTCGACTTCAGCACATTGCTCTTCCTCCTCAGCCGCATCGGACATGGTAGATCGCTCCATAAC CAAGGACAAATGCATCGTACAGGTGACGGCGGTCAAAGCCAATTCCGGTAACAAAAGACACACTGATAGGGATTCACAGCCGGAAGACACTCGGCCAACT GTTTCCGAATCTTCGGTGCATAACATGATTCCTACAACACAGGCAGCATCAACTACTACAGCTACCACTATTACAACAACTGGCTATGTCACCTCGAGCC AATCGATAGGTGACTCGAGACAAAAGCGGTTTGACACCTCGTCATACCAACAAAGGGCAGAGGCATTGGAGGGGCTACTTGAGTTCAGCTCGCGTCTATT GCAGCAAGAACGCTTTGACGAGCTAGCTGTGCTCCTCAAACCGTTCGGACCTGAAAAAGTATCCCCCAGGGAGACTGCCATTTGGTTGGCTAAGAGCTTC AAAGAGACAGCTGCAGCCTGA
AA sequence Show only first row Show all	>Lus10042632 pacid=23181709 polypeptide=Lus10042632 locus=Lus10042632.g ID=Lus10042632.BGIv1.0 annot-version=v1.0 MEQYEVLEQIGKGSFGSALLVRHRHEKKKYVLKKIRLARQTDRARRSAHQEMDLLSKVRNPYIVEYKDSWVEKGCYVCIVIGYCEGGDMSDAVKRANGVH FSEEKLCKWLVQLLVALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMSAHK PAFKAFDIQALINKINKSIIAPLPTVYSASFRGLVKSMLRKNPELRPSAAELLSHTHLQPYVLNAHLKLNNPRRTTLPARWSDSNFVKKTRFVEADSFVT CREKRLSYSNDRSLNPSISEAELDSGCSSQGVSQSPRVQNQNYRAKTPRPVPAKCSTPRRLSTTPAKHPVTCTKGNRTSHPTRRASLPLPLKNSAGDTPH TAKLRPLRNLESPDVSVNAPRMDKMAEFPLSVSSSGSLVPIRGTLSSTSAHCSSSSAASDMVDRSITKDKCIVQVTAVKANSGNKRHTDRDSQPEDTRPT VSESSVHNMIPTTQAASTTTATTITTTGYVTSSQSIGDSRQKRFDTSSYQQRAEALEGLLEFSSRLLQQERFDELAVLLKPFGPEKVSPRETAIWLAKSF KETAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Lus10042632 [exp]	0	1
AT4G13630			Protein of unknown function, D...		Lus10016673 [exp]	4.2	0.8828
AT5G13250			RING finger protein (.1)		Lus10002575 [exp]	4.8	0.9112
AT5G13250			RING finger protein (.1)		Lus10001802 [exp]	9.3	0.9089
AT1G13635			DNA glycosylase superfamily pr...		Lus10019199 [exp]	17.3	0.8998
AT4G35240			Protein of unknown function (D...		Lus10016004 [exp]	18.5	0.8982
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038066 [exp]	20.2	0.8886
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10018637 [exp]	31.7	0.8955
AT4G14760			kinase interacting (KIP1-like)...		Lus10021908 [exp]	32.0	0.8896
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008225 [exp]	34.3	0.8923
AT5G55970			RING/U-box superfamily protein...		Lus10016652 [exp]	35.8	0.8903

Compare expression of checked genes

Lus10042632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.