Gene [FLAX] | FIBexDB

Lus10042634 [FLAX]

External link

Symbol

Arabidopsis homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT4G34215	87 / 3e-21			Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)
AT3G53010	82 / 2e-19			Domain of unknown function (DUF303) (.1)

Paralogs

Show only best Show top 10

Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10001128 [exp]	140 / 1e-41	AT4G34215	260 / 4e-87	Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)
Lus10014097 [exp]	94 / 5e-24	AT4G34215	326 / 4e-113	Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)
Lus10019817 [exp]	84 / 9e-21	AT4G34215	207 / 7e-68	Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)
Lus10001129 [exp]	84 / 9e-20	AT3G53010	296 / 6e-100	Domain of unknown function (DUF303) (.1)
Lus10042636 [exp]	77 / 1e-17	AT3G53010	220 / 3e-71	Domain of unknown function (DUF303) (.1)

Poplar homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.014G022700 [exp]	100 / 2e-26	AT4G34215	282 / 7e-96	Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)
Potri.009G096400 [exp]	95 / 2e-24	AT4G34215	315 / 4e-109	Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)
Potri.014G022600 [exp]	92 / 5e-23	AT3G53010	301 / 2e-102	Domain of unknown function (DUF303) (.1)
Potri.001G300800 [exp]	89 / 6e-22	AT4G34215	311 / 2e-107	Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)
Potri.009G096500 [exp]	73 / 7e-17	AT4G34215	117 / 3e-33	Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0264 [flax] [poplar]	SGNH_hydrolase	PF03629 [flax] [poplar]	SASA	Carbohydrate esterase, sialic acid-specific acetylesterase

Representative CDS sequence

Show only first row Show all

>Lus10042634 pacid=23181845 polypeptide=Lus10042634 locus=Lus10042634.g ID=Lus10042634.BGIv1.0 annot-version=v1.0

ATGGCGTCATATAATTTGAAAGTTAGGGCATCAAATAGTAGTCATCATAATAATAGTAGTAGGAGCAGGATGGTGGTTCGGTTGGTTCCTTGTGCGGTGG

GAGTCACCGGCATCCGACGGTGGAGAAAAGGGAGGAGGTTGTACCGTGGGATGGTGGCGAGGACGAGAGCGGCAGCTAGAAATGGAGGGAGGATTAGGGG

GTTGTTATGGTATCAAGGGGAGAGCGATACAGTGCGGAGAGAAGACCCCTCCTACAAAGGGAGATTGGAAAAGCTTATTTCGGATTTGCGGTTTATGGAG

GAAGTGAGGAAAGGTCAATTGGGAATCAAAGTTGGTAATGTGAAATGCGTAGATGCCAAGGGATTTGGGCTGAAGACAGATCATCTCCACCTCACTACTT

CTTTTGAGGTTATGTTGGGTCACAGGCTAGCCAGCGAGTTCCTTTCTTACTCATTTTAG

AA sequence

Show only first row Show all

>Lus10042634 pacid=23181845 polypeptide=Lus10042634 locus=Lus10042634.g ID=Lus10042634.BGIv1.0 annot-version=v1.0

MASYNLKVRASNSSHHNNSSRSRMVVRLVPCAVGVTGIRRWRKGRRLYRGMVARTRAAARNGGRIRGLLWYQGESDTVRREDPSYKGRLEKLISDLRFME

EVRKGQLGIKVGNVKCVDAKGFGLKTDHLHLTTSFEVMLGHRLASEFLSYSF

DESeq2's median of ratios [FLAX]

Coexpressed genes

Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34215			Domain of unknown function (DU...		Lus10042634 [exp]	0	1

Lus10042634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.