Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34215 77 / 3e-16 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) AT3G53010 77 / 3e-16 Domain of unknown function (DUF303) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027047 [exp] 242 / 5e-76 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1) Lus10012639 [exp] 224 / 1e-72 ND / Lus10011962 [exp] 206 / 1e-65 ND / Lus10011950 [exp] 199 / 1e-62 ND 40 / 0.001 Lus10010369 [exp] 183 / 2e-56 ND / Lus10025371 [exp] 175 / 1e-52 ND / Lus10001128 [exp] 150 / 1e-43 AT4G34215 260 / 4e-87 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10020839 [exp] 139 / 1e-40 ND / Lus10021761 [exp] 137 / 3e-39 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G022700 [exp] 94 / 3e-22 AT4G34215 282 / 7e-96 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.014G022600 [exp] 79 / 7e-17 AT3G53010 301 / 2e-102 Domain of unknown function (DUF303) (.1) Potri.001G300800 [exp] 75 / 1e-15 AT4G34215 311 / 2e-107 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.009G096400 [exp] 75 / 1e-15 AT4G34215 315 / 4e-109 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042635 pacid=23181733 polypeptide=Lus10042635 locus=Lus10042635.g ID=Lus10042635.BGIv1.0 annot-version=v1.0 ATGTCCAAGCTGATAATGTTCACCTTGCTCTGCTCAGTGATAACATTATTATACGAACATGCAGCAGCAGCTTCTCCGACAGACATATTCATCCTAGCAG GACAGAGCAACATGGCAGGGAGAGGAGGAGTGGAGCACGGCAAGTGGGACAGCGTCGTCCCTCAGCCGTCAGCTCCAAACCCGGCCATCCTCCGACTGAG TGCCAGGCTGGAATGGGAAGTAGCAAGGGAGCCACTCTACTGGGATATCGACGTGAAACAAGACGTGGGGTGGGGCCAGCACAGTCGAGATCTGGGAAAT ATGGCGAAAACGAAGGGTGGAGGTAAATCGCACAGTCGAGATCCGGTAGAGGAAGAAACCGATAGGATCCAGAAAATGAGAGGGGAAGGAAAGCAAGCGG GCATTTTAGATCGGATGAAAAAGCGAGTAATCACCGCTTCGTGGCAGAAAGAGGGAGAGGCAGCGAAGAAGAACAAGAAGTTGAAAATCTACGGCTCCCC TGTCCGGTACCCTCCTGTTACGTACCTAGTTAGGTTGTATCAGGAAGATGATGTCGAGGATGAGGGTCCACCGCCGGGGTTTGAGTACAATGACACACAG ACATCCGCCCACATGACTTCTTCGCACGCGGCTTCTCGGCACCTCGCTTCTACAGACTCGTCACATGTCTCCGCGAGTGCTGTCGTTAGAAGAGGGAAAC CTAGCCGACTTGCGCGGGTCCGGGAGGAGGAGGCCGCCAATGCAGTGGACTGGCAGGGACTGAATCGTACTTGGGAGCTTACTGCGGGGCTTCCAGATGG TGGACCGAGGATGCCGACAGTGATCACTAACTTCGGAGGTCACATTGCACGCTACTTGTGGCAGTCGGTCGAGGGATACAGGGATCTGAAGGTTTTTCAG GTTCATGAAACGTCCTAA
AA sequence Show only first row Show all	>Lus10042635 pacid=23181733 polypeptide=Lus10042635 locus=Lus10042635.g ID=Lus10042635.BGIv1.0 annot-version=v1.0 MSKLIMFTLLCSVITLLYEHAAAASPTDIFILAGQSNMAGRGGVEHGKWDSVVPQPSAPNPAILRLSARLEWEVAREPLYWDIDVKQDVGWGQHSRDLGN MAKTKGGGKSHSRDPVEEETDRIQKMRGEGKQAGILDRMKKRVITASWQKEGEAAKKNKKLKIYGSPVRYPPVTYLVRLYQEDDVEDEGPPPGFEYNDTQ TSAHMTSSHAASRHLASTDSSHVSASAVVRRGKPSRLARVREEEAANAVDWQGLNRTWELTAGLPDGGPRMPTVITNFGGHIARYLWQSVEGYRDLKVFQ VHETS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53010			Domain of unknown function (DU...		Lus10042635 [exp]	0	1
					Lus10036026 [exp]	2.0	0.8297
AT4G35690			Arabidopsis protein of unknown...		Lus10028382 [exp]	2.4	0.8253
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10027223 [exp]	2.4	0.8360
					Lus10041324 [exp]	10.2	0.7280
AT1G49570			Peroxidase superfamily protein...		Lus10023858 [exp]	12.5	0.7843
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10026617 [exp]	15.6	0.7678
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10017677 [exp]	16.4	0.7947
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004180 [exp]	19.1	0.6871
					Lus10022574 [exp]	19.5	0.7070
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10004781 [exp]	22.4	0.8044

Compare expression of checked genes

Lus10042635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.