Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53010 220 / 3e-71 Domain of unknown function (DUF303) (.1) AT4G34215 185 / 4e-58 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001129 [exp] 451 / 7e-162 AT3G53010 296 / 6e-100 Domain of unknown function (DUF303) (.1) Lus10014097 [exp] 197 / 2e-62 AT4G34215 326 / 4e-113 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10001128 [exp] 177 / 1e-54 AT4G34215 260 / 4e-87 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10019817 [exp] 131 / 5e-38 AT4G34215 207 / 7e-68 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10042634 [exp] 86 / 1e-20 AT4G34215 122 / 7e-35 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10042635 [exp] 56 / 7e-09 AT3G53010 78 / 2e-16 Domain of unknown function (DUF303) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G022600 [exp] 244 / 1e-80 AT3G53010 301 / 2e-102 Domain of unknown function (DUF303) (.1) Potri.009G096400 [exp] 198 / 2e-63 AT4G34215 315 / 4e-109 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.014G022700 [exp] 196 / 2e-62 AT4G34215 282 / 7e-96 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.001G300800 [exp] 188 / 3e-59 AT4G34215 311 / 2e-107 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.009G096500 [exp] 113 / 2e-31 AT4G34215 117 / 3e-33 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF03629 [flax] [poplar] SASA Carbohydrate esterase, sialic acid-specific acetylesterase
Representative CDS sequence Show only first row Show all	>Lus10042636 pacid=23181980 polypeptide=Lus10042636 locus=Lus10042636.g ID=Lus10042636.BGIv1.0 annot-version=v1.0 ATGGCCGGCCGCGACGGCGTCTTTAACGACACCGCCACAGTGAAAATGCAGTGGGACCGCATCGTACCGGCCCAGTGCCAGCCGAACCCGTCGATCCTAC GGTTGAGCAAAGAGCTGATGTGGGTCACGGGTCAGGAGCCGCTCCATGCCGACATCGATTTCAGAAAGACAAACGGAGTCGGGCCGGGTATGGCCTTCGG GAACGCGCTGGTGACCCAGGACCCGACGATGGGAGTTAGGGGTGAGGCCGCGGTGGCGATCGGAGGAGGGAAAATCCCTGCTCTGCTTTGGTATCAAGGT GAGAGCGATACCAATAGTAAAGAGGACGCCGATCAATATAAGGGTAGATTGGAGACTTTTTTTTACCATGTCAGAGAAGATCTGCAGCTTCCCTCGCTTC CAATTATCCAGGTGGCTTTGGCGTCGTCGGAGGGCCCGTTCAAGGAGACGGTGAGAAATGCTCAGCTAGGAATTAGCATGACGAATTTGGTAACGGTAGA CGCCGATGGGTTACCTATTGGACCGGACGGACTATATCTGACAACGGCGTCACAAGTTCAACTGGGTCACATGTTGGCTGATGGATTTCTAAAGGCCAAG TTCACGAAACCTACGATCCGAACTAGTCTTCGATCCAGCAACTATTCGCCGCCGACGACCAATCCTGCCGGAGTGTTGGTGGGTCCATTATTGATGGCGG CTTTTGTTTTTAGTTTAAACATTGGGCTTATAAGAAGGACTTGCTACTTGTAG
AA sequence Show only first row Show all	>Lus10042636 pacid=23181980 polypeptide=Lus10042636 locus=Lus10042636.g ID=Lus10042636.BGIv1.0 annot-version=v1.0 MAGRDGVFNDTATVKMQWDRIVPAQCQPNPSILRLSKELMWVTGQEPLHADIDFRKTNGVGPGMAFGNALVTQDPTMGVRGEAAVAIGGGKIPALLWYQG ESDTNSKEDADQYKGRLETFFYHVREDLQLPSLPIIQVALASSEGPFKETVRNAQLGISMTNLVTVDADGLPIGPDGLYLTTASQVQLGHMLADGFLKAK FTKPTIRTSLRSSNYSPPTTNPAGVLVGPLLMAAFVFSLNIGLIRRTCYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53010			Domain of unknown function (DU...		Lus10042636 [exp]	0	1
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014586 [exp]	4.9	0.7192
AT5G67265			unknown protein		Lus10042633 [exp]	8.4	0.8027
AT5G62440			Protein of unknown function (D...		Lus10024794 [exp]	8.9	0.6244
AT3G52360			unknown protein		Lus10016198 [exp]	9.4	0.6967
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030577 [exp]	10.9	0.6866
					Lus10013098 [exp]	17.9	0.6434
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036822 [exp]	35.7	0.6354
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10042747 [exp]	37.9	0.6192
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10027397 [exp]	47.1	0.6134
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10000397 [exp]	48.4	0.6802

Compare expression of checked genes

Lus10042636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.