Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24210 185 / 2e-60 SLY1 SLEEPY1, F-box family protein (.1) AT5G48170 67 / 3e-14 SNE, SLY2 SNEEZY, SLEEPY2, F-box family protein (.1) AT1G21760 42 / 7e-05 ATFBP7 F-box protein 7 (.1) AT5G44220 41 / 0.0002 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001172 [exp] 65 / 2e-13 AT5G48170 164 / 2e-52 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10012335 [exp] 61 / 5e-12 AT5G48170 145 / 6e-45 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10006381 [exp] 56 / 6e-10 AT5G48170 140 / 5e-43 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10028024 [exp] 49 / 6e-07 AT2G27310 158 / 4e-45 F-box family protein (.1) Lus10003731 [exp] 47 / 3e-06 AT2G27310 160 / 3e-46 F-box family protein (.1) Lus10042716 [exp] 43 / 6e-05 AT1G69740 644 / 0.0 Aldolase superfamily protein (.1.2) Lus10029676 [exp] 41 / 0.0003 AT1G21760 444 / 5e-156 F-box protein 7 (.1) Lus10032969 [exp] 40 / 0.0006 AT5G39250 351 / 1e-123 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G122300 [exp] 258 / 7e-89 AT4G24210 185 / 2e-60 SLEEPY1, F-box family protein (.1) Potri.014G022100 [exp] 246 / 4e-84 AT4G24210 182 / 1e-59 SLEEPY1, F-box family protein (.1) Potri.014G165700 [exp] 62 / 2e-12 AT5G48170 144 / 9e-45 SNEEZY, SLEEPY2, F-box family protein (.1) Potri.002G054500 [exp] 56 / 2e-09 AT2G27310 122 / 2e-31 F-box family protein (.1) Potri.005G208200 [exp] 45 / 1e-05 AT2G27310 130 / 3e-34 F-box family protein (.1) Potri.004G119500 [exp] 43 / 3e-05 AT5G39250 347 / 8e-122 F-box family protein (.1) Potri.002G082500 [exp] 43 / 4e-05 AT1G21760 474 / 7e-170 F-box protein 7 (.1) Potri.004G005700 [exp] 42 / 7e-05 AT5G63520 419 / 8e-142 unknown protein Potri.004G076800 [exp] 41 / 0.0001 AT5G04010 122 / 9e-33 F-box family protein (.1) Potri.005G178600 [exp] 41 / 0.0002 AT1G21760 479 / 6e-172 F-box protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10042637 pacid=23181994 polypeptide=Lus10042637 locus=Lus10042637.g ID=Lus10042637.BGIv1.0 annot-version=v1.0 ATGAAGCGTACTCTGGACGCGGATTCCGGTTCTCAATCCAAGCGAATCAGGGTCCAGGATGAAGAACCATCCAAAGATTTGAGCGATTCGGGAACTGGGT TCGTCAATTTGGACGAGAATCTGCTGTACGAGGTGCTGAAGCACGCCGATGCTGCTACCCTGGGGCGAGCGGCGTGCGTCAGCAAGCAGTGGCACCGGAC AGCCGAGGACGAGCGGCTCTGGGAGCTGATCTGCACCAAACACTGGGCCAACATCGGGTGCGGTAACCAGCAGCTTAGATCTGTAGTCCTGGCACTTGGA GGGTTCCGCCGCCTTCACTCCCAGTACCTCTGGCCTCTCTCCAAACCCCAGTCATCTGCCTCTTCTTCTTCGTCTTCTTCTTCATCGCAATGGGCTAATT TCCCGCCGATGATAGGAGCTAAGCCTCCAGCAAAGTGGGGGAAGGATGAGGTCCATCTCTCCCTGTCCCTGCTTTCAATTCGGTACTACGAGAAGATGAA TTTTGGTAACCGAGGGAGATGA
AA sequence Show only first row Show all	>Lus10042637 pacid=23181994 polypeptide=Lus10042637 locus=Lus10042637.g ID=Lus10042637.BGIv1.0 annot-version=v1.0 MKRTLDADSGSQSKRIRVQDEEPSKDLSDSGTGFVNLDENLLYEVLKHADAATLGRAACVSKQWHRTAEDERLWELICTKHWANIGCGNQQLRSVVLALG GFRRLHSQYLWPLSKPQSSASSSSSSSSSQWANFPPMIGAKPPAKWGKDEVHLSLSLLSIRYYEKMNFGNRGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24210		SLY1	SLEEPY1, F-box family protein ...		Lus10042637 [exp]	0	1
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10013397 [exp]	8.9	0.8369
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10022459 [exp]	9.7	0.8283
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039562 [exp]	9.8	0.8245
AT2G34585			unknown protein		Lus10023307 [exp]	11.5	0.7903
AT3G15260			Protein phosphatase 2C family ...		Lus10009210 [exp]	11.7	0.8263
AT3G10400		U11/U12-31K	U11/U12-31K, RNA recognition m...		Lus10038693 [exp]	19.9	0.7955
AT1G77370			Glutaredoxin family protein (....		Lus10028355 [exp]	20.5	0.8200
AT5G56520			unknown protein		Lus10020285 [exp]	25.1	0.8199
AT4G01000			Ubiquitin-like superfamily pro...		Lus10012629 [exp]	28.1	0.8126
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10000928 [exp]	28.3	0.8159

Compare expression of checked genes

Lus10042637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.