Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25900 580 / 0 ATKO1, CYP701A3, GA3 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) AT4G37430 203 / 3e-59 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1) AT4G37330 180 / 1e-50 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT5G57220 179 / 2e-50 CYP81F2 "cytochrome P450, family 81, subfamily F, polypeptide 2", cytochrome P450, family 81, subfamily F, polypeptide 2 (.1) AT2G40890 178 / 1e-49 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT4G37400 177 / 2e-49 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT4G37410 176 / 4e-49 CYP81F4 "cytochrome P450, family 81, subfamily F, polypeptide 4", cytochrome P450, family 81, subfamily F, polypeptide 4 (.1) AT3G10560 175 / 2e-48 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1) AT2G23190 172 / 2e-47 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1) AT5G07990 171 / 5e-47 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011667 [exp] 800 / 0 AT5G25900 624 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10032750 [exp] 799 / 0 AT5G25900 619 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10022898 [exp] 781 / 0 AT5G25900 567 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10042641 [exp] 767 / 0 AT5G25900 595 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10032747 [exp] 758 / 0 AT5G25900 592 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10020437 [exp] 210 / 1e-61 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10034156 [exp] 186 / 1e-52 AT5G04660 679 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Lus10033524 [exp] 185 / 3e-52 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10020847 [exp] 183 / 2e-51 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129700 [exp] 639 / 0 AT5G25900 665 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Potri.014G021700 [exp] 192 / 6e-55 AT5G10600 436 / 7e-149 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) Potri.008G025500 [exp] 188 / 2e-53 AT5G04660 761 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Potri.006G033300 [exp] 184 / 4e-52 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031100 [exp] 184 / 5e-52 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.014G020500 [exp] 183 / 8e-52 AT4G37370 462 / 2e-159 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G144000 [exp] 182 / 2e-51 AT5G36220 496 / 6e-173 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Potri.016G031000 [exp] 177 / 2e-49 AT2G40890 776 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.003G006000 [exp] 177 / 2e-49 AT4G37370 526 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G143800 [exp] 176 / 4e-49 AT4G37370 539 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10042640 pacid=23181826 polypeptide=Lus10042640 locus=Lus10042640.g ID=Lus10042640.BGIv1.0 annot-version=v1.0 ATGGACTCGGTTCCTAGCCTCCAACCTGCAACTTTGGCAGCGGCTACCGTAGGTGGATTGGCCTTCCTCCTGTATTTCATGAAAATGTTGATCGCTAATA AGAAGACAAAATCCAATCTCCGCCGAATTCCTGAGGTTCCTGGGCTCCCGATAATCGGAAACTTGTTGCGGCTGAAGGAAAAGAAACCCCATAAAACTTT TGCCAAATGGACCGAGGATTATGGCTCAATCTACACCATCAGAACAGGTTCCAAATCAATTGTTGTCATCAACTCCACTGATGTTGCAAAAGAGGCCATG GTGACAAAATATTCGTCAATAAGCACTAGGAAGCTACCGAAGGCTTTGAATATACTCACTCAAAACAAATCCATTGTTGCTATGAGTGATTATGGTGATT TGTATAATACGCTCAAACGCCACCTTCTCACAAGCGTTTTGAGCACTACTGCTCAGAAAAACCATCGCTTTAACAAAGTACTCATGGGAAACAATATATC AAACCGTTTGCAAGCTCATGCAAAGGCTAATCCTGGACAAGCTTTCAATTTCAGATTAATTTTCGAGTCTGAACTCTTTGATTTATCTATGAGACAAGCA ATCGGGAAGGAAATTGAGTCCATCTATGTCAAGGAATTAGGGATTAGATTGTCTCGGGAAGAAATCTTTAAGACTCTTGTATCGGATCCATTGGACGGCG TCATAGAGCTAGACTGGAGAGAGTTCTTCCCATACCTAAGTTGGATCCCCAATCCTAAGTTTGAAAAGAAGATCGAACAAATACATTTTAGAAGGGATGC ATTGCTCACTACTATCATTAGGGAACAAAAGCAGAGAATTGCTTCCGGCGAGGTGATCGACTGTTATATTGACCACTTGGTTTCTAAAGCTGACACATTG ACCGATCTCCAAATCAGAATGTTAGTATGGGAAATGATTATTGCAGCATCTGATACAGTAGTGGTCGTTACGGAGTGGGCTATGTATCAATTAGCCAAAA ATCCTGAAACTCAAGAGAGGTTATTTCAACAAATTCAGAGTGAGTGTGGGTCTGAGAATCTGTCAGAACAACACTTGTCAAAACTTCCATACCTAAGTGC TGTCTTTCACGAGACTTTAAGAAGGTATACCCCTGTTCCTGTGATTGCTTTGCGCCATGTTGATGAAGACACTGAGTTAGGAGGGTATCATGTCCCTGCC GGAACTGATATTGCTATCAACTTATATGGATGCAACATGGATGACAATCAATGGGAGAACCCTGAAGAGTGGATACCAGAGAGGTTCGTCAATGGGGCAT CTGAATCAACTGAGTTGTATAAAACTATGGCATTTGGAAGAGGGAAAAGGGCTTGTACAGGAGCTCTCCAAGCAATGTTGATTGCTTGCACATCAATAGG GAGAATGGTGCAACAATTTGAGTGGAGTCTTAGGGAAGGAGAGCAAGATAATGAAGATACTGTGGCACTTACTTCTAGGAAACTTGAACCGTTGCACACA ATCATCAAGCCAAGATGCTAG
AA sequence Show only first row Show all	>Lus10042640 pacid=23181826 polypeptide=Lus10042640 locus=Lus10042640.g ID=Lus10042640.BGIv1.0 annot-version=v1.0 MDSVPSLQPATLAAATVGGLAFLLYFMKMLIANKKTKSNLRRIPEVPGLPIIGNLLRLKEKKPHKTFAKWTEDYGSIYTIRTGSKSIVVINSTDVAKEAM VTKYSSISTRKLPKALNILTQNKSIVAMSDYGDLYNTLKRHLLTSVLSTTAQKNHRFNKVLMGNNISNRLQAHAKANPGQAFNFRLIFESELFDLSMRQA IGKEIESIYVKELGIRLSREEIFKTLVSDPLDGVIELDWREFFPYLSWIPNPKFEKKIEQIHFRRDALLTTIIREQKQRIASGEVIDCYIDHLVSKADTL TDLQIRMLVWEMIIAASDTVVVVTEWAMYQLAKNPETQERLFQQIQSECGSENLSEQHLSKLPYLSAVFHETLRRYTPVPVIALRHVDEDTELGGYHVPA GTDIAINLYGCNMDDNQWENPEEWIPERFVNGASESTELYKTMAFGRGKRACTGALQAMLIACTSIGRMVQQFEWSLREGEQDNEDTVALTSRKLEPLHT IIKPRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10042640 [exp]	0	1
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10011977 [exp]	1.0	0.9627
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10019195 [exp]	8.8	0.9277
AT5G42230		SCPL41	serine carboxypeptidase-like 4...		Lus10023444 [exp]	9.9	0.9272
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10036832 [exp]	12.6	0.9224
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10020776 [exp]	12.6	0.7766
					Lus10003755 [exp]	14.0	0.9213
					Lus10030912 [exp]	15.3	0.9195
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10019196 [exp]	16.5	0.9191
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10013195 [exp]	19.0	0.9186
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027771 [exp]	20.0	0.9153

Compare expression of checked genes

Lus10042640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.