Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47200 91 / 1e-23 WPP2 WPP domain protein 2 (.1) AT5G43070 87 / 3e-22 WPP1 WPP domain protein 1 (.1) AT5G27940 57 / 9e-11 WPP3 WPP domain protein 3 (.1) AT3G63130 41 / 0.0002 ATRANGAP1, RANGAP1 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009747 [exp] 122 / 5e-36 AT1G47200 119 / 1e-34 WPP domain protein 2 (.1) Lus10010235 [exp] 107 / 4e-30 AT1G47200 124 / 2e-36 WPP domain protein 2 (.1) Lus10006930 [exp] 45 / 1e-05 AT3G63130 712 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Lus10014670 [exp] 44 / 2e-05 AT3G63130 717 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G021900 [exp] 107 / 8e-30 AT1G47200 115 / 1e-32 WPP domain protein 2 (.1) Potri.002G122000 [exp] 101 / 1e-27 AT1G47200 111 / 1e-31 WPP domain protein 2 (.1) Potri.002G052900 [exp] 49 / 3e-07 AT3G63130 664 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.005G209600 [exp] 47 / 2e-06 AT3G63130 667 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.010G091100 [exp] 43 / 4e-05 AT5G19320 646 / 0.0 RAN GTPase activating protein 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042643 pacid=23181990 polypeptide=Lus10042643 locus=Lus10042643.g ID=Lus10042643.BGIv1.0 annot-version=v1.0 ATGTCCGACGCTGACACCGCTGCTGCCGCTCCCCCGCTAGAAAATCCAGCTAAGCAATCGGAGGAAAAGCCGTCAGCGCTGCCACAAGTCAGAAGCAGAA TTGCTCTAAGCATTTGGCCTCCTTCGCAGCGCACCCGCGACGCTGTCATAGATCGCCTAATCGAGACCTTATCCACTCCCTCATTTCTCTCCAAGCGCTA CGGGACAATTCCAGCGGAAGAGGCTGCCGACGCCGCTCGGCGTATCGAGGAGGAAGCCTTCGCTACTTCCACTGAATCTACTTCCGCCGATGACGACGGT CTCGAGATACTCCAGCACTATTCCAAGGAGATCAGCAAGCGCATGCTGGGAACAGTAAAGGTTAGGGCCAGGTCGGATACCGCAGCGTCTGAAATTGCTC CGTCCACGCCCCCGCTGGATGTTCCGTCACACCCTGCTTCTGCTAGTGAAGAAGTTTCGTCTTCTGTTGAGACTGAGGCATGA
AA sequence Show only first row Show all	>Lus10042643 pacid=23181990 polypeptide=Lus10042643 locus=Lus10042643.g ID=Lus10042643.BGIv1.0 annot-version=v1.0 MSDADTAAAAPPLENPAKQSEEKPSALPQVRSRIALSIWPPSQRTRDAVIDRLIETLSTPSFLSKRYGTIPAEEAADAARRIEEEAFATSTESTSADDDG LEILQHYSKEISKRMLGTVKVRARSDTAASEIAPSTPPLDVPSHPASASEEVSSSVETEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10042643 [exp]	0	1
AT5G67200			Leucine-rich repeat protein ki...		Lus10041101 [exp]	2.2	0.9326
AT5G37930			Protein with RING/U-box and TR...		Lus10009111 [exp]	4.6	0.8909
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10026036 [exp]	5.2	0.9229
AT5G45590			Ribosomal protein L35 (.1)		Lus10010409 [exp]	5.9	0.9097
AT2G14660			unknown protein		Lus10033766 [exp]	7.5	0.8992
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10011862 [exp]	8.4	0.9016
AT1G64450			Glycine-rich protein family (....		Lus10023071 [exp]	10.5	0.8796
AT4G28100			unknown protein		Lus10018524 [exp]	10.8	0.8836
AT2G24440			selenium binding (.1)		Lus10026958 [exp]	11.5	0.9245
AT4G06599			ubiquitin family protein (.1)		Lus10001294 [exp]	11.5	0.8742

Compare expression of checked genes

Lus10042643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.