Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67090 400 / 7e-131 Subtilisin-like serine endopeptidase family protein (.1) AT3G14240 382 / 2e-123 Subtilase family protein (.1) AT2G05920 379 / 2e-122 Subtilase family protein (.1) AT3G14067 366 / 2e-117 Subtilase family protein (.1) AT5G67360 363 / 2e-116 ARA12 Subtilase family protein (.1) AT5G51750 362 / 6e-116 ATSBT1.3 subtilase 1.3 (.1) AT1G01900 354 / 6e-113 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT4G34980 349 / 6e-111 SLP2 subtilisin-like serine protease 2 (.1) AT1G04110 345 / 2e-109 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G04160 315 / 4e-98 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001130 [exp] 1082 / 0 AT5G67090 581 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009748 [exp] 820 / 0 AT5G67090 601 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009365 [exp] 483 / 7e-163 AT5G67090 637 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10024815 [exp] 462 / 2e-154 AT5G67090 543 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10018721 [exp] 410 / 3e-134 AT5G67360 531 / 7e-179 Subtilase family protein (.1) Lus10024814 [exp] 404 / 4e-133 AT3G14240 504 / 3e-169 Subtilase family protein (.1) Lus10036546 [exp] 391 / 5e-127 AT1G01900 822 / 0.0 subtilase family protein (.1) Lus10041382 [exp] 387 / 1e-125 AT1G01900 825 / 0.0 subtilase family protein (.1) Lus10027891 [exp] 384 / 4e-124 AT5G67360 531 / 3e-178 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G124500 [exp] 658 / 0 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026700 [exp] 650 / 0 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026500 [exp] 618 / 0 AT5G67090 604 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.007G045100 [exp] 576 / 0 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G100500 [exp] 431 / 2e-142 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G026600 [exp] 402 / 1e-131 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.014G074600 [exp] 388 / 5e-126 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.001G163600 [exp] 384 / 3e-124 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.003G071800 [exp] 382 / 2e-123 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 376 / 2e-121 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10042644 pacid=23181658 polypeptide=Lus10042644 locus=Lus10042644.g ID=Lus10042644.BGIv1.0 annot-version=v1.0 ATGAGAGGAGAATGTGAAACAGGAACCCAATTCAACAGTTCCCTATGCAACAACAAGCTCATTGGAGCTCGGGCATGCAACAGAGGCCTTATCGCAAGAA ACATCTCTATAACCATGAACTCCGCTCGTGACACCGACGGACACGGCACCCACACGAACAACAAGCCAAAGGCACACGTGGCTATGTACAAGGCCCTGTT TGACGAAGGCGCGTTCGCATCAGACATCATTGCGGCAATTGATCGAGCACTTGGCGACGGTGTTGATGTCATATCACTCTCTCTTGGATTGGACGGCGTC GCCTTGTATGAGGACCCAATCGCCCTGGCCACTTTTGCCGCCGTTGAGAAGAACGTGTTCGTTGCTACTTCCGCCGGCAACCAAGGCCCTTTTCTCCAAT CTCTCCATAACGGCATTCCCTGGGTATTGACCGTCGCGGCCGGAGCAATTGACCGGGAATTTCAAGCCGAGGTCAAGCTCGGAAACGGAAAAGTTTCCGT TTCCGGTTCGTCTCTGTACCCGGGAAACTACTCCGCCACCCAAGCTCCGATCGTCTTCATGGGAGATTGCCTTAACGCGACGAAAATCAGGGGAATGTCG AACGGCAAAATCGTGGTGTGCGAAGATAAGAACTCTACACTGAGAGAGCAGTTAGAAAACGTCCAGAATTCCAGCGCAGTCGGGGGCGTTTTCATAGCCA ACGTTTCGTCTTCGGATCTCGAATTCTTAATCCAGTCGCCGTTTCAATCGATTTTCATGACTGTAAGAGATGGCGAGAAGGTGAAGAAGTACGTCAAGAG CAGTAACGAACCAAAAGCAAGCTTGAAGTTCCAAGTAACGAATTTGAACGCGAAACCAGCACCGACAGTTACGAGTTACAGCTCCAGGGGGCCATCTCCT AGCTGCAAGGTCGTACTGAAGCCCGACATCATGGGTCCTGGCTCATTGATCTTAGCAGCTTGGCCGTCCAATGTAGAAGCCACCGAGGTTAGATCCAAGC CTCTGTACACTGATTTCAATCTATTGTCCGGCACGTCAATGTCAACCCCGCATTTAGCCGGAGTTGGGGCGCTTATTAAAAAGGCACATCCAGACTGGAG CCCTGCAGCGGTACGATCGGCCATGATGACAACTGCCGATGCCAGGGATCTATCTGGGCAACCGATTCAGGATTTGGGTAATGATAATAATAATAATAGT CCAGCCACAGGTTTAGCCATTGGAGCGGGTCAGGTCAACCCGAACAAAGCACTGGACCCGGGTCTAATATATGATGTGAACACAACCGATTACGTCAACC TGCTTTGTGGGCTCAATTTCACGGCAAAGCAAATCCAAGCCATCACAGGCTCATCGTCATCTACCAATAATTGTGATTCCCCGTCCCTAGATCTTAATTA TCCATCGTTCATAGCCTTTTTCGAGGGAAACAGCTCCCATTCTCCTAATCAAGTAATGGAGTTCCGTAGGACGGTGACGAATGTGGGTGATGATGGAATG GCGAGTTATGAATCAGCTTTGACGCCGTTGGAAGGGTTGCATGTTAGTGTGATACCGAGTAAGCTGGAGTTCAAAGCCAAAGGGGAAAAGCTTAGCTTCA AGCTTGTGGTTGAAAGTGTTGGGGTTATGAAGAAATTGTATGTAAGCTCGGGTTATCTCAAATGGATAGAAGATGGAGGGAATCATGTTGTGCAAAGTCC AATAGTGGCCACTAACGTCAACTTCCAGTCATTCTCGTCTCCAAAGAACTAG
AA sequence Show only first row Show all	>Lus10042644 pacid=23181658 polypeptide=Lus10042644 locus=Lus10042644.g ID=Lus10042644.BGIv1.0 annot-version=v1.0 MRGECETGTQFNSSLCNNKLIGARACNRGLIARNISITMNSARDTDGHGTHTNNKPKAHVAMYKALFDEGAFASDIIAAIDRALGDGVDVISLSLGLDGV ALYEDPIALATFAAVEKNVFVATSAGNQGPFLQSLHNGIPWVLTVAAGAIDREFQAEVKLGNGKVSVSGSSLYPGNYSATQAPIVFMGDCLNATKIRGMS NGKIVVCEDKNSTLREQLENVQNSSAVGGVFIANVSSSDLEFLIQSPFQSIFMTVRDGEKVKKYVKSSNEPKASLKFQVTNLNAKPAPTVTSYSSRGPSP SCKVVLKPDIMGPGSLILAAWPSNVEATEVRSKPLYTDFNLLSGTSMSTPHLAGVGALIKKAHPDWSPAAVRSAMMTTADARDLSGQPIQDLGNDNNNNS PATGLAIGAGQVNPNKALDPGLIYDVNTTDYVNLLCGLNFTAKQIQAITGSSSSTNNCDSPSLDLNYPSFIAFFEGNSSHSPNQVMEFRRTVTNVGDDGM ASYESALTPLEGLHVSVIPSKLEFKAKGEKLSFKLVVESVGVMKKLYVSSGYLKWIEDGGNHVVQSPIVATNVNFQSFSSPKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67090			Subtilisin-like serine endopep...		Lus10042644 [exp]	0	1
AT1G67750			Pectate lyase family protein (...		Lus10011400 [exp]	1.4	0.8260
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10023505 [exp]	8.5	0.7601
AT1G23880			NHL domain-containing protein ...		Lus10030850 [exp]	12.0	0.7439
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10028297 [exp]	12.3	0.7448
AT5G25390	AP2_ERF	SHN3, SHN2	shine3, Integrase-type DNA-bin...		Lus10002912 [exp]	15.0	0.7575
AT4G05090			Inositol monophosphatase famil...		Lus10006739 [exp]	24.5	0.6351
AT5G57670			Protein kinase superfamily pro...		Lus10019990 [exp]	27.9	0.7329
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10004571 [exp]	30.9	0.7100
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10019453 [exp]	33.9	0.7290
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10000910 [exp]	37.0	0.7067

Compare expression of checked genes

Lus10042644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.