Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G46264 277 / 1e-90 HSF SCZ, AT-HSFB4 SCHIZORIZA, heat shock transcription factor B4 (.1) AT4G11660 180 / 1e-52 HSF AT-HSFB2B, HSFB2B HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) AT5G62020 174 / 4e-51 HSF AT-HSFB2A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) AT4G36990 170 / 8e-50 HSF AT-HSFB1, ATHSF4, HSF4, HsfB1 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) AT4G17750 162 / 8e-45 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT1G32330 157 / 3e-43 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT3G02990 150 / 2e-40 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT2G41690 142 / 1e-39 HSF AT-HSFB3, HSFB3 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) AT3G24520 143 / 3e-39 HSF AT-HSFC1 heat shock transcription factor C1 (.1) AT3G22830 144 / 1e-38 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001133 [exp] 584 / 0 AT1G46264 319 / 4e-107 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10036062 [exp] 199 / 1e-60 AT1G46264 245 / 3e-79 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10008007 [exp] 194 / 4e-58 AT4G11660 306 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10024508 [exp] 190 / 5e-56 AT4G11660 308 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10014994 [exp] 177 / 3e-52 AT5G62020 259 / 2e-85 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Lus10019348 [exp] 174 / 2e-51 AT4G36990 254 / 3e-84 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10026819 [exp] 160 / 8e-48 AT1G46264 167 / 2e-51 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10000312 [exp] 168 / 2e-47 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10009351 [exp] 164 / 2e-47 AT4G36990 248 / 1e-81 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G027100 [exp] 326 / 2e-109 AT1G46264 335 / 9e-114 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.002G124800 [exp] 323 / 4e-108 AT1G46264 353 / 7e-121 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.001G273700 [exp] 199 / 4e-61 AT1G46264 251 / 2e-82 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.009G068000 [exp] 194 / 4e-59 AT1G46264 258 / 4e-85 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.001G108100 [exp] 191 / 3e-57 AT4G11660 285 / 2e-94 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Potri.007G043800 [exp] 182 / 2e-54 AT4G36990 241 / 3e-79 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Potri.012G138900 [exp] 171 / 7e-50 AT5G62020 230 / 2e-74 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.015G141100 [exp] 169 / 1e-49 AT5G62020 233 / 8e-76 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.001G138900 [exp] 171 / 3e-48 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.016G056500 [exp] 160 / 7e-47 AT2G41690 218 / 1e-71 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10042646 pacid=23181863 polypeptide=Lus10042646 locus=Lus10042646.g ID=Lus10042646.BGIv1.0 annot-version=v1.0 ATGGCACTGATAGTGGAGAACTCGGCATCATCATCATGCGGAGTCGACGGCGGGATGTTGCTGTCACTGGAATCCCAGAAGTCGGTGCCGGCTCCATTCC TCACCAAGACTTACCAGCTTGTGGACGACCCTTCCACCGACGATATCGTTTCTTGGGGAGAAGACCACTCTACTTTCATCGTCTGGCGTCCACCTGAATT CGCTCGCGACCTCCTCCCTAACTACTTCAAGCATAACAACTTCTCCTCCTTCGTCCGCCAGCTCAACACCTACGGGTTTAGGAAAATAGTGCCTGATAGA TGGGAATTCGCCAATGACTTCTTCAAGAAGGGCGAAAAACACTTGCTCTGCGAAATCCACCGCAGAAAGACAGCTCAGCTTCCTCCACCTCCTCCGCCAC ACCACCGCCACCATTATCATCCGGCGGGTGGCTTCTTCCCTTTCTCGACCAACCGCCTCAGCATCTCTCCGTCCGACGACGCTGACGACCACTACTTCCA ACACAATCACAATAACTGGTCCCCTCCGTCGGGAACTTTATCAGGGCTAATGGGACCCGCCAGCATGATGATAAACGGAGCAGGAGGAGGAGGAGTGTAC TACACCACTGGTGGTGGTGGTGGTGGTGGTAGTGGTAATACTAGTAGTGCAGCAGGGACGGTGACGGCGTTATCACAGGACAACGAAAGGCTGAGGAGGA GCAACAATATGCTGATGACGGAGTTATCTCACATGAAGAAGCTTTACAACGACATCATCTATTTTGTTCAGAACCACGTCAAGCCCGTCCCTCCTCCCAC ACCCAATAAGGCTCCTCCGTTAAACCAGCTGCTGCTTGGTGGTGGATATAACAACAACACCAACAATATGACGAGTACGATGATGATGATGAAGAAAGGG CAATCAGGTGCTCCTCATGTTCAAGTGCTGGGTACTAACAGCACTACTATAACATCTCCAAGCTACAGTGGTAACAAGAGCAGCAACAACTCCCACAGCA CTGTCACCATTCTTGAAGAAATTGAAGGGTGCAACAACAACAACACCAAGTTGTTTGGAGTGGCCATTAATAATAATCATAATCATAACCAGTCTTCCAA GAAGAGATTGCACCCGGACCATGACTACGCCATCAATCATCAGACTAGTACTAATAGTAGTAGTAAGTCTCACCGTTTTGTTTTGGAAAAGGATGATTTG GGTTTGAACCTAATGCCTCCTTCTCCTTGTTAG
AA sequence Show only first row Show all	>Lus10042646 pacid=23181863 polypeptide=Lus10042646 locus=Lus10042646.g ID=Lus10042646.BGIv1.0 annot-version=v1.0 MALIVENSASSSCGVDGGMLLSLESQKSVPAPFLTKTYQLVDDPSTDDIVSWGEDHSTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR WEFANDFFKKGEKHLLCEIHRRKTAQLPPPPPPHHRHHYHPAGGFFPFSTNRLSISPSDDADDHYFQHNHNNWSPPSGTLSGLMGPASMMINGAGGGGVY YTTGGGGGGGSGNTSSAAGTVTALSQDNERLRRSNNMLMTELSHMKKLYNDIIYFVQNHVKPVPPPTPNKAPPLNQLLLGGGYNNNTNNMTSTMMMMKKG QSGAPHVQVLGTNSTTITSPSYSGNKSSNNSHSTVTILEEIEGCNNNNTKLFGVAINNNHNHNQSSKKRLHPDHDYAINHQTSTNSSSKSHRFVLEKDDL GLNLMPPSPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10042646 [exp]	0	1
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10022150 [exp]	1.7	0.8874
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	1.7	0.9064
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10009874 [exp]	3.5	0.9027
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10043153 [exp]	3.7	0.8628
AT3G54710		ATCDT1B, CDT1B,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10040505 [exp]	4.2	0.8531
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	5.3	0.8770
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017885 [exp]	12.0	0.8463
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10013476 [exp]	12.4	0.8433
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10016012 [exp]	12.7	0.8245
AT1G05370			Sec14p-like phosphatidylinosit...		Lus10041206 [exp]	12.8	0.8185

Compare expression of checked genes

Lus10042646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.