Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67060 149 / 3e-44 bHLH HEC1, bHLH088 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G50330 149 / 3e-44 bHLH HEC2, bHLH037 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G09750 127 / 7e-36 bHLH HEC3, bHLH043 HECATE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00120 126 / 9e-36 bHLH IND1, GT140, bHLH040, IND, EDA33 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G21330 128 / 7e-35 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G01310 85 / 2e-18 bHLH APTX, bHLH140 APRATAXIN-like (.1) AT4G33880 82 / 9e-18 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) AT5G43175 79 / 1e-17 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G27740 79 / 2e-17 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1) AT1G66470 79 / 6e-17 bHLH AtRHD6, RHD6, bHLH083 ROOT HAIR DEFECTIVE6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005710 [exp] 277 / 5e-94 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012670 [exp] 149 / 3e-44 AT3G50330 158 / 3e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10033488 [exp] 142 / 1e-41 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003500 [exp] 108 / 2e-27 AT3G21330 192 / 5e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009745 [exp] 104 / 4e-26 AT3G21330 112 / 2e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10002213 [exp] 91 / 4e-22 AT5G01310 108 / 8e-28 APRATAXIN-like (.1) Lus10003386 [exp] 91 / 1e-20 AT5G01310 107 / 1e-24 APRATAXIN-like (.1) Lus10001068 [exp] 81 / 2e-17 AT4G33880 179 / 2e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10004315 [exp] 81 / 3e-17 AT4G33880 179 / 3e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G125000 [exp] 177 / 7e-55 AT5G67060 137 / 2e-39 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G044600 [exp] 169 / 4e-52 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G027300 [exp] 170 / 7e-52 AT5G67060 141 / 6e-41 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G138900 [exp] 151 / 7e-45 AT3G50330 134 / 2e-38 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G108000 [exp] 149 / 2e-44 AT4G00120 150 / 3e-45 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G060900 [exp] 144 / 2e-42 AT4G00120 151 / 7e-46 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G191800 [exp] 125 / 4e-33 AT3G21330 230 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G102600 [exp] 92 / 6e-23 AT5G01310 112 / 4e-29 APRATAXIN-like (.1) Potri.016G120800 [exp] 92 / 8e-23 AT5G01310 109 / 3e-28 APRATAXIN-like (.1) Potri.017G126800 [exp] 80 / 2e-17 AT5G37800 203 / 3e-63 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10042647 pacid=23181833 polypeptide=Lus10042647 locus=Lus10042647.g ID=Lus10042647.BGIv1.0 annot-version=v1.0 ATGGAAAGGTACTCATCATCATCCTCCTCCACAGATGATCATCAAGACCACCAAACCACCACCACCACCATGCCAATGGAGTCCATGCTTATGATGATGG CCGAGAAGCAGCACCTCCCTGTCGTCGACGACTATCTCTACTCCTTTGACTGCGGTGGTGCAACTAATCCCACCAACGCCACCACCATTAACCCATTCAA CACCAACAACCCACTTCCTTCAACTACCTTGTCCTTTTCCACTACATCTCAAGATCAGCAATCAATCTCATGGAGAGATCTCATGATGACGGGTGAATCC GGTAACGATAATGTCGTCAATGGTCGAGGTATGGGGTCAAATAATAGTAACAACAAGGCGTCGATGGCGGCGATGAGGGAGATGATATTCAGGATAGCGG CGATGCAGCCGATCCACATAGACCCGGAGTCGGTGAAGCCACCCAAGAGGAGGAACGTCAGGATATCTAAAGACCCGCAGAGCGTGGCGGCGCGTCACAG AAGGGAAAGGATTAGCGAGAAGATTAGGATACTTCAGAGGCTAGTCCCAGGTGGTACTAAGATGGATACTGCTTCCATGTTGGATGAAGCTATTCATTAC GTTAAGTTCTTGAAGAACCAAGTCCAGTCTCTTGAGCGCAATGCTCCTCATCGCCCGCCGGCGCCGGTGGCAGCTGGCATTGGGTTTCCTGTGCCTGTCA CTAATGGCCATTGGAAAAGCGGTTATAATCAACAGCCTCCGGCGCACCAAGATATTTCTGGTTATGGGGATGCTTAA
AA sequence Show only first row Show all	>Lus10042647 pacid=23181833 polypeptide=Lus10042647 locus=Lus10042647.g ID=Lus10042647.BGIv1.0 annot-version=v1.0 MERYSSSSSSTDDHQDHQTTTTTMPMESMLMMMAEKQHLPVVDDYLYSFDCGGATNPTNATTINPFNTNNPLPSTTLSFSTTSQDQQSISWRDLMMTGES GNDNVVNGRGMGSNNSNNKASMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVRISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHY VKFLKNQVQSLERNAPHRPPAPVAAGIGFPVPVTNGHWKSGYNQQPPAHQDISGYGDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10042647 [exp]	0	1
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Lus10000494 [exp]	1.0	0.9687
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10033651 [exp]	3.2	0.9431
AT5G38650			Proteasome maturation factor U...		Lus10005377 [exp]	4.0	0.9208
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042378 [exp]	5.0	0.9373
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	6.5	0.9411
AT3G54400			Eukaryotic aspartyl protease f...		Lus10008654 [exp]	7.4	0.8610
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028929 [exp]	9.2	0.9409
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10028780 [exp]	9.2	0.9213
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	9.5	0.9360
					Lus10031884 [exp]	12.8	0.9038

Compare expression of checked genes

Lus10042647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.