Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42930 488 / 3e-170 alpha/beta-Hydrolases superfamily protein (.1) AT1G56630 461 / 3e-159 alpha/beta-Hydrolases superfamily protein (.1) AT1G45201 421 / 1e-143 AtTLL1 ARABIDOPSIS THALIANA TRIACYLGLYCEROL LIPASE-LIKE 1, triacylglycerol lipase-like 1 (.1.2) AT5G67050 384 / 3e-129 alpha/beta-Hydrolases superfamily protein (.1) AT3G14360 314 / 2e-101 alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 67 / 1e-11 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G30370 60 / 3e-09 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT5G18640 57 / 8e-09 alpha/beta-Hydrolases superfamily protein (.1) AT5G18630 53 / 2e-07 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G06800 50 / 2e-06 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005709 [exp] 898 / 0 AT5G42930 517 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10005092 [exp] 419 / 7e-143 AT5G42930 490 / 2e-171 alpha/beta-Hydrolases superfamily protein (.1) Lus10009361 [exp] 393 / 2e-132 AT5G42930 478 / 4e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10003925 [exp] 342 / 4e-112 AT3G14360 574 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037465 [exp] 330 / 1e-107 AT3G14360 584 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 57 / 2e-08 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023281 [exp] 56 / 4e-08 AT1G30370 342 / 2e-113 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 55 / 7e-08 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10042914 [exp] 54 / 2e-07 AT2G44810 464 / 1e-163 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G027800 [exp] 528 / 0 AT5G42930 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027500 [exp] 516 / 0 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027400 [exp] 515 / 1e-180 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G044500 [exp] 442 / 6e-152 AT5G67050 502 / 7e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G138800 [exp] 422 / 4e-144 AT5G42930 433 / 7e-149 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G161500 [exp] 335 / 5e-109 AT3G14360 633 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G073800 [exp] 321 / 8e-104 AT3G14360 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 63 / 2e-10 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G263200 [exp] 60 / 2e-09 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G218500 [exp] 57 / 1e-08 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10042648 pacid=23181881 polypeptide=Lus10042648 locus=Lus10042648.g ID=Lus10042648.BGIv1.0 annot-version=v1.0 ATGGGTGGTGATGATGATGGCTGTGTAATGATGATGAATGATGATGGACAAGTAGTTGACATTAATAGACTGTTGCTGCAGCCGGAGGAAGCTGGGTTAT GGGATCTCATTCTTTTACTCTGGAGCTCCGACGTCCAAAGTAGAAAATTCGTGGAGTGCTCCCATCAACAAGCTAATGAGACGACGGAGGTGAACGACTT CCATCCAAGATGGCTGATATTCATATCCGTGGTTTTCCAGAAGTTGTTCCTTCGCTCCAAAGGCACATTGGACAGCCTAGGCAGGGGAATTGAGATGTGG CTCAATCTCCTCTCCACCAATGCCGGATTTCTCAACCTCCTCTTCAATCTCCTCATCAAGCGGGAGGTGGAGTGGCCGCAGAGGTCATCGGCGGAATTCA GGTCGTTGATTGGGAACCTTGACCTGAGTGTGGAGATGATGAAAACTCCAGGTCACAGGAGATACGAGGCTGTCTTGTCGTTAATGGCTGCAAAACTGTC GTACGAGAATGAGGCCTTTGCTAAATCCGTAGTCCAAGATCGTTGGAATATGGAATTCAAGGGATTCTACGATTTTTGGAATGAGTACCAAGGAGAAGCA TCAACACAAGCCATAGCATTCAAAGACACCAAAAGCGAGCCTAACCTAACGACGTTGGCATTCAGAGGGACATCCCCGTTTGATGCCGCTGCATGGTGCA CCGACTTAGACCTGTCCTGGTACCAAATCCAAGGCGTTGGAAAAATCCACAGTGGTTTCATGAAGGCCCTGGGCCTCCAAAAGAACGGCTGGCCACTCCA ATTGAAGAGGAACAACGACGACGACGCTGATCAGCTCCATCCTTACGCATATTACTTCCTGAGGGAAATGCTGATAGATGAACTTCGAAAGGACCCCGAT TCCAAGTTTATAGTGACGGGACACAGCCTTGGTGGCGCCCTGGCGATACTGTTTGTTGGTGTTTTGGCGATGCATGGAGATGCAGAGTTGTTGCAGAGAT TGGAAGGGGTTTACACTTTCGGGCAGCCCAGAGTTGGGGATGAACAGTTTGGTGAATTCATGGAAGGGAAGCTCAAGGAATACGGAGTTAAGTATATGAG GTTCGTGTATGCTAATGATGTGGTTCCGAGGTTGCCTTATGATGATAAGACTCTATTTTACAAGCATTTTGGACCTACCTTATTCTACAATAGCTGCTAC AAGGTCAAGGTGATGGAGGAGGAGCCCAATAAGAACTATTTCGGGGTGTTGTGGGTGGTGCCGAAGGTATTGAATGCGGTGTGGGAGTTGGTAAGGAGTT TCATAGGGCCATGCATAAGCATAAGAGGGAGGGAGATGCGAGATAGTTGGTTAATGAGAGTGTTTAGGGTCATAGGGTTGGTGCTTCCTGGTTTAGCTAA TCACTGTCCTCAAGATTATGACAACTGCACCAGATTCGGAGATTGGCCCAAGTCTCTACAGCAGCTGCAACCCCATGGCTACTCGCCCACTCATCTAGAT TAA
AA sequence Show only first row Show all	>Lus10042648 pacid=23181881 polypeptide=Lus10042648 locus=Lus10042648.g ID=Lus10042648.BGIv1.0 annot-version=v1.0 MGGDDDGCVMMMNDDGQVVDINRLLLQPEEAGLWDLILLLWSSDVQSRKFVECSHQQANETTEVNDFHPRWLIFISVVFQKLFLRSKGTLDSLGRGIEMW LNLLSTNAGFLNLLFNLLIKREVEWPQRSSAEFRSLIGNLDLSVEMMKTPGHRRYEAVLSLMAAKLSYENEAFAKSVVQDRWNMEFKGFYDFWNEYQGEA STQAIAFKDTKSEPNLTTLAFRGTSPFDAAAWCTDLDLSWYQIQGVGKIHSGFMKALGLQKNGWPLQLKRNNDDDADQLHPYAYYFLREMLIDELRKDPD SKFIVTGHSLGGALAILFVGVLAMHGDAELLQRLEGVYTFGQPRVGDEQFGEFMEGKLKEYGVKYMRFVYANDVVPRLPYDDKTLFYKHFGPTLFYNSCY KVKVMEEEPNKNYFGVLWVVPKVLNAVWELVRSFIGPCISIRGREMRDSWLMRVFRVIGLVLPGLANHCPQDYDNCTRFGDWPKSLQQLQPHGYSPTHLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10042648 [exp]	0	1
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10015737 [exp]	1.4	0.9788
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10003468 [exp]	2.0	0.9719
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010437 [exp]	2.4	0.9656
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10021133 [exp]	4.5	0.9544
					Lus10028069 [exp]	4.9	0.9598
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Lus10008309 [exp]	4.9	0.9532
AT3G22640		PAP85	cupin family protein (.1)		Lus10022072 [exp]	4.9	0.9614
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10023857 [exp]	6.3	0.9609
					Lus10034979 [exp]	7.5	0.9470
AT1G23460			Pectin lyase-like superfamily ...		Lus10029139 [exp]	7.9	0.9592

Compare expression of checked genes

Lus10042648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.