Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45207 383 / 2e-125 Remorin family protein (.2) AT4G36970 161 / 4e-43 Remorin family protein (.1) AT2G02170 76 / 4e-14 Remorin family protein (.1.2) AT1G67590 68 / 6e-12 Remorin family protein (.1.2) AT1G30320 68 / 9e-12 Remorin family protein (.1) AT1G53860 67 / 2e-11 Remorin family protein (.1) AT3G61260 62 / 1e-10 Remorin family protein (.1) AT5G23750 59 / 7e-10 Remorin family protein (.1.2) AT3G57540 60 / 1e-09 Remorin family protein (.1) AT3G48940 58 / 1e-09 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005708 [exp] 868 / 0 AT1G45207 454 / 2e-154 Remorin family protein (.2) Lus10009750 [exp] 650 / 0 AT1G45207 445 / 8e-151 Remorin family protein (.2) Lus10010227 [exp] 623 / 0 AT1G45207 441 / 6e-149 Remorin family protein (.2) Lus10039007 [exp] 241 / 3e-73 AT4G36970 213 / 4e-65 Remorin family protein (.1) Lus10027302 [exp] 235 / 8e-71 AT4G36970 215 / 8e-66 Remorin family protein (.1) Lus10003936 [exp] 73 / 4e-13 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10014785 [exp] 64 / 1e-11 AT3G61260 177 / 1e-56 Remorin family protein (.1) Lus10038522 [exp] 65 / 2e-11 AT1G30320 296 / 2e-98 Remorin family protein (.1) Lus10037454 [exp] 66 / 4e-11 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G027900 [exp] 618 / 0 AT1G45207 442 / 1e-149 Remorin family protein (.2) Potri.002G125200 [exp] 593 / 0 AT1G45207 384 / 9e-127 Remorin family protein (.2) Potri.005G138500 [exp] 306 / 7e-98 AT4G36970 231 / 1e-71 Remorin family protein (.1) Potri.007G044350 [exp] 81 / 2e-17 AT4G36970 100 / 4e-25 Remorin family protein (.1) Potri.008G144300 [exp] 79 / 3e-15 AT2G02170 431 / 5e-147 Remorin family protein (.1.2) Potri.001G163000 [exp] 79 / 4e-15 AT1G53860 333 / 6e-110 Remorin family protein (.1) Potri.002G157700 [exp] 68 / 9e-13 AT3G61260 167 / 2e-52 Remorin family protein (.1) Potri.008G178300 [exp] 69 / 2e-12 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.014G081300 [exp] 66 / 3e-12 AT3G61260 199 / 4e-65 Remorin family protein (.1) Potri.010G056800 [exp] 67 / 8e-12 AT1G67590 253 / 8e-82 Remorin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10042649 pacid=23182040 polypeptide=Lus10042649 locus=Lus10042649.g ID=Lus10042649.BGIv1.0 annot-version=v1.0 ATGCCGGAGCCAGCACCAAATCTTTACCAAAATCATTCCTCGTCGACAGCAGCGGCCACTTTCAGAGCGCGAGACGCCAGTCCCGACTCCGTCTTTTTCT GTCTTTTCTCCTCCACCTCCAACAGCGTCGGACGCTGCTCTTTTGCTTCCGAAGCTTACAATAACGACTCTCTTACCTCCGACTTCTTCTCATCGCATTT GGCAGCGAGCGGCGGCGGGATTGAACGGCTGGAGAGTTGCAGTGGTGGTTCAGATCATCAACGAGATCTAGATCGGGACCAAGCGAATGCAGCTTGGAAC AACCAGAACAAGCACGGCAATCAGCTGGGTCGGGTTTCATCCAGAAAGAGTGATAAAGTGAAAGGTAGCTCTCCAGCTCGATGTGAGCTTTCTTTTTCAA CTACAGTTTTGAGTAGAAGGTTGAAAAAGGTCGAAAGGTACCAAAACAAACGGACAAAGAAAGTTGGGAAAACAATAACTGTAGATTTGAAATTGCACGA CACATGTTCGTTCTTTTGCGCTCACTGCCTGCTTTTGGAATCAGATGCAGCTCAAAAGGACGAAAGCAACAGAAGAGCTATTTCTGCAGAAGAAGGCGGA TTCCAGCTGCTGGATTCAGCTAGGAGCTCATTTGCTCTCGCTCTCAAAGAGTGTCAAGATCAGAGATCCAGATCTGAAGCGGCAGCGAAGAAGAACGACA GGAGGAGACCTGTTTCGTTAGATTTGAACAATGTCGTCCCAGCCTCGTCGCCCCGGTTGGGGGCCGTGAAGCAGACCTCAATCTCGTTGTCTCGCAAGTC CGGAACGTTTCCTAGCCCAGGCACGCCAAACTATCGCCACGCGAGTGTTGGAGTGATGCAGAAAGGCTGGAGTTCAGAGAGAGTGCCGGCGCTGCATGCC GGCGGCAACAGACGCCAAATAAGCGGCGGGGCGTTGTTCCCTTACAATAACGGGAGGGCTTTGCCGTCGAAGTGGGAGGATGCCGAGCGATGGATTTTCA GCCCTGTTTCTGGCGACGGTGTGGTGAGGACGTCGGTTCCGCTTCCTCGGAGAAGACCAAAATCCAAGAGTGGACCGCTAGGGCCCCCTGGCGTTGCTTA TTATTCGCTGTTTTCGCCTGCAGTACCGGCCATTGATTGTGGGAATATGAGGAACTTCACGGTTGGTTCTCCCTTTTCCACCGGTGTTATAGCTGCTGAT GGATTGACTTCTTGTCCTAATCGCCATGGAGTTGCCTTTCCATTCCGGACAGAGCCTTGCATGGCCCGTTCTGTAAGTGTCCATGGATGTTCTCAGATGT TAGATCAGACTTCCTCCTTACCGAATCAAGAAGATAGAGTCGAAAATGTCAAAGATGCTGCCACCGACATATCCCGAGCTGTTTCAAGAAGAGACATGGC TACTCAAATGAGTCCTGGGAGCAGTAACCATTCATCTCCTAGCAAGAGGCTGTCGTTTACGGCCTCCTCCCCCTCTGCTCTGCCTATTGTGGAACTGCAA AGTGTACAGTCCTCTAAATCAGAAGTTAGGGATGTGCAGGTAGATGAAAAGGTTACTGTTACAAGATGGTCCAGAAGGCATAGGGGTGGCAACAATAGTA AGGGTTCTGATATTGCTGATGACTGGAGAAAGAAAGTCGTTGCCTGTCGGTCTTCAGCTTGGGAGGTTGCAGAGACCACTGAAGGCATTTCAAAAGCTCA AAGAGAGGAAGCCAAAATCTCAGCCTGGGAGAATCTGCAGAAGGCAAAAGCTGAAGCATCAATGAGGAAGCTTGAGATGAAGTTGGAAAAGAAGAGGTCG ACCTCCATGGACAAGATTATGAACAAACTGAGATCAGCCCAGAAGAGAGCACAAGAAATGAGAAGTTCAGTCCTGTCCAACCAGGCTCGTCAGGTTTCAC GCACCACTGACAAGACAGTGTCATTCAGGAGAACCCGCCAGATGGGTACACTGAGCGGCTGCTTTACTTGCCACGCTTTCTAA
AA sequence Show only first row Show all	>Lus10042649 pacid=23182040 polypeptide=Lus10042649 locus=Lus10042649.g ID=Lus10042649.BGIv1.0 annot-version=v1.0 MPEPAPNLYQNHSSSTAAATFRARDASPDSVFFCLFSSTSNSVGRCSFASEAYNNDSLTSDFFSSHLAASGGGIERLESCSGGSDHQRDLDRDQANAAWN NQNKHGNQLGRVSSRKSDKVKGSSPARCELSFSTTVLSRRLKKVERYQNKRTKKVGKTITVDLKLHDTCSFFCAHCLLLESDAAQKDESNRRAISAEEGG FQLLDSARSSFALALKECQDQRSRSEAAAKKNDRRRPVSLDLNNVVPASSPRLGAVKQTSISLSRKSGTFPSPGTPNYRHASVGVMQKGWSSERVPALHA GGNRRQISGGALFPYNNGRALPSKWEDAERWIFSPVSGDGVVRTSVPLPRRRPKSKSGPLGPPGVAYYSLFSPAVPAIDCGNMRNFTVGSPFSTGVIAAD GLTSCPNRHGVAFPFRTEPCMARSVSVHGCSQMLDQTSSLPNQEDRVENVKDAATDISRAVSRRDMATQMSPGSSNHSSPSKRLSFTASSPSALPIVELQ SVQSSKSEVRDVQVDEKVTVTRWSRRHRGGNNSKGSDIADDWRKKVVACRSSAWEVAETTEGISKAQREEAKISAWENLQKAKAEASMRKLEMKLEKKRS TSMDKIMNKLRSAQKRAQEMRSSVLSNQARQVSRTTDKTVSFRRTRQMGTLSGCFTCHAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45207			Remorin family protein (.2)		Lus10042649 [exp]	0	1
AT1G54610			Protein kinase superfamily pro...		Lus10012805 [exp]	1.4	0.9419
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10006961 [exp]	3.9	0.8729
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10003343 [exp]	4.2	0.9169
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10025980 [exp]	4.2	0.9209
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Lus10022095 [exp]	7.1	0.8620
AT4G18820			AAA-type ATPase family protein...		Lus10005422 [exp]	8.5	0.9132
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10018778 [exp]	8.7	0.8968
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10034288 [exp]	9.2	0.8662
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	11.7	0.8959
AT1G78060			Glycosyl hydrolase family prot...		Lus10007775 [exp]	11.7	0.8794

Compare expression of checked genes

Lus10042649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.