Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09890 840 / 0 Protein kinase family protein (.1.2) AT3G23310 627 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G14350 623 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT1G03920 616 / 0 Protein kinase family protein (.1) AT2G20470 614 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G30640 599 / 0 Protein kinase family protein (.1) AT4G33080 597 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) AT2G19400 578 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT5G62310 258 / 3e-75 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G45160 256 / 6e-75 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005707 [exp] 1016 / 0 AT5G09890 853 / 0.0 Protein kinase family protein (.1.2) Lus10011814 [exp] 629 / 0 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10033911 [exp] 628 / 0 AT2G20470 831 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10003541 [exp] 625 / 0 AT2G20470 850 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10021176 [exp] 623 / 0 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10031332 [exp] 268 / 1e-78 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10005470 [exp] 258 / 3e-76 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10027196 [exp] 255 / 3e-74 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038912 [exp] 253 / 2e-73 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G125800 [exp] 915 / 0 AT5G09890 828 / 0.0 Protein kinase family protein (.1.2) Potri.014G028900 [exp] 889 / 0 AT5G09890 796 / 0.0 Protein kinase family protein (.1.2) Potri.005G226700 [exp] 642 / 0 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.010G070600 [exp] 635 / 0 AT4G14350 894 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.008G167800 [exp] 635 / 0 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.002G036200 [exp] 626 / 0 AT2G20470 857 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.011G157000 [exp] 619 / 0 AT4G14350 800 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.006G224800 [exp] 614 / 0 AT4G33080 832 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) Potri.006G146900 [exp] 606 / 0 AT2G19400 755 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G263000 [exp] 271 / 3e-80 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00433 [flax] [poplar] Pkinase_C Protein kinase C terminal domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042650 pacid=23181782 polypeptide=Lus10042650 locus=Lus10042650.g ID=Lus10042650.BGIv1.0 annot-version=v1.0 ATGGACGGCGGTGCTGATGGAACGGTGAGATTAGGGGCTTTGAACTTGCGCCAGGAGCGGACTGGTCTTGACTCTGGTCCGGATGTGTCTGTTTCCTCGC CGGTCACCAGGCAGAAAGCTGCTGCCGCCAAGCAGTTCATCGAGAATCATTACAAGAATTATTTGCAAGGATTGCAGGATCGTAAAGAGAGACGGCGGAC TCTCCAACGCAGAGCGCAAGAAGCTCAGGTATCAACTGAGGACCAGGAGGAATTGATGAAGAACCTGGCAAGGAGAGAAACTGAGTTCATGAGGCTCCAA AGACGCAAAGTTGGGATCGATGACTTCGAACAGTTGACTGTCATTGGTAAAGGCGCGTTCGGAGAGGTAAGGTTATGCCAGGCCAAAGGCACTGGACAGA TTTTTGCTATGAAGAAACTGAAGAAATCAGAAATGCTTAGTCGCGGGCAGGTTGAGCATGTTCGATCAGAACGGAATTTACTGGCAGAGGTTGACAGTCG CTGCATTGTAAAACTCTTCTATTCTTTTCAAGATTCGGAGTTCTTATACCTAATCATGGAATATTTACCCGGTGGAGACATCATGACACTACTGATGAGG GAAGATATTCTTTCTGAGGATGTAGCTCGCTTTTACATAGCTGAGAGCATCTTAGCTATACACTCAATCCATCAACACAATTATATTCACAGGGACATAA AACCAGACAACCTCATACTGGACAAAAATGGCCATTTGAAGCTGTCAGACTTTGGTTTGTGCAAGCCCCTAGATGACAAGTATTCAACTTTGCTGGAAAA TGAAGACATTGTCACCCAGGATGCCACGAATGACAGTGGAGATAAGCCACCTTGGATGATGCCTAAGGAGCAATTACAACAATGGAAACGCAATCGCCGT GCCCTTGCTTATTCAACTGTTGGAACTCTTGATTACATGGCACCTGAAGTGTTGCTGAAGAAGGGATACGGGATGGAATGTGATTGGTGGTCACTTGGAG CAATTATGTATGAAATGCTCGTTGGGTACCCACCCTTCTGTTCTGATGATCCAAGGATCACATGCCGAAAGATAATAAACTGGAAGACATGCATGAATTT CCCTGATGAGCCAAAGGTTTCAAATGAGGCCAAAGATCTGATCCGGCACTTGCTTTGTGACGTTGATACGAGACTGGGGACCAGAGGAGTGGAAGAATTG AAGGCACATCCATGGTTTAGATCCGTTCAATGGGATAAGCTGTATGAAATGGAGGCTGCATATAAGCCCACAGTCAATGGAGAGTTGGACACGCAAAACT TTGAGAAGTTTCCTGAATTGGAAGGTGCACCGTCAGCAGGTCCCAGTGTGGGACCATGGAGGAAGATGTTGGCTTCAAAAGATACCAACTTCATTGGATT CACTTACAAGAAATCAGATGTTCTGAAATCCTTGGAAAACTCAGGCACGGACATGAAATCAAATGGGACTTCCAAGACCCCTTCCTTGATTTCCTTGTTA GGTCGGATGGACTTGCAAGAAACAGCGATACCAGAAGTTGACGACAAGTCAGAATCCTGA
AA sequence Show only first row Show all	>Lus10042650 pacid=23181782 polypeptide=Lus10042650 locus=Lus10042650.g ID=Lus10042650.BGIv1.0 annot-version=v1.0 MDGGADGTVRLGALNLRQERTGLDSGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKERRRTLQRRAQEAQVSTEDQEELMKNLARRETEFMRLQ RRKVGIDDFEQLTVIGKGAFGEVRLCQAKGTGQIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLPGGDIMTLLMR EDILSEDVARFYIAESILAIHSIHQHNYIHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSTLLENEDIVTQDATNDSGDKPPWMMPKEQLQQWKRNRR ALAYSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFCSDDPRITCRKIINWKTCMNFPDEPKVSNEAKDLIRHLLCDVDTRLGTRGVEEL KAHPWFRSVQWDKLYEMEAAYKPTVNGELDTQNFEKFPELEGAPSAGPSVGPWRKMLASKDTNFIGFTYKKSDVLKSLENSGTDMKSNGTSKTPSLISLL GRMDLQETAIPEVDDKSES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09890			Protein kinase family protein ...		Lus10042650 [exp]	0	1
AT5G01460			LMBR1-like membrane protein (....		Lus10035505 [exp]	1.4	0.8522
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	2.0	0.8484
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Lus10038739 [exp]	7.0	0.8089
AT1G77610			EamA-like transporter family p...		Lus10042700 [exp]	7.5	0.8063
AT1G61850			phospholipases;galactolipases ...		Lus10007661 [exp]	9.2	0.8257
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Lus10030492 [exp]	9.8	0.7829
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003526 [exp]	13.2	0.8219
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10001437 [exp]	14.3	0.7161
AT5G24710			Transducin/WD40 repeat-like su...		Lus10040564 [exp]	16.4	0.8226
AT4G32120			Galactosyltransferase family p...		Lus10001920 [exp]	17.0	0.8020

Compare expression of checked genes

Lus10042650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.