Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19270 612 / 0 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT4G19230 532 / 0 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G45340 525 / 0 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT2G29090 499 / 1e-174 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT5G05690 259 / 9e-81 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT1G05160 248 / 3e-76 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT2G32440 241 / 7e-74 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT1G19630 235 / 1e-71 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) AT3G50660 236 / 2e-71 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT4G36380 235 / 5e-71 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021725 [exp] 832 / 0 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10019858 [exp] 562 / 0 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10012675 [exp] 527 / 0 AT3G19270 586 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10033308 [exp] 508 / 7e-178 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10034768 [exp] 501 / 2e-175 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10035685 [exp] 496 / 3e-173 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10016515 [exp] 440 / 4e-151 AT2G29090 554 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Lus10040785 [exp] 352 / 1e-109 AT1G07510 1078 / 0.0 FTSH protease 10 (.1) Lus10037273 [exp] 322 / 3e-106 AT4G19230 461 / 2e-161 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G029100 [exp] 679 / 0 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.002G126100 [exp] 677 / 0 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G140900 [exp] 630 / 0 AT3G19270 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G101700 [exp] 615 / 0 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G235400 [exp] 527 / 0 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.009G033900 [exp] 506 / 2e-177 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.001G242600 [exp] 501 / 5e-175 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.002G069600 [exp] 271 / 2e-85 AT5G45340 296 / 1e-95 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Potri.008G067500 [exp] 254 / 3e-79 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.010G189800 [exp] 251 / 1e-77 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10042652 pacid=23182042 polypeptide=Lus10042652 locus=Lus10042652.g ID=Lus10042652.BGIv1.0 annot-version=v1.0 ATGGGCGATGGATTCTTTCTCAATATCCTACTACTAGTAGTAGTATTCATCATCATCATCATCATCATCATCACTCTCTCTTGCTACTTATTACTGATCA CCAAAATCAGAAAACCTCACCTCCTCCCTCCTGGCTCCATGGGGTGGCCTGTGGTGGGCGAGACTCTGCAGCTATACTCACAGGATCCATCCATTTTCTT CTCATCCAAACAGAAAAGATATGGAGAAATATTCAAGACCCACATCCTAGGTTGCCCTTGCATCATGCTTGCTAGCCCTGAAGCTGCACGATTCGTTCTT GTCACTCAAGCTCATCTCTTTAAGCCCACCTACCCTAAATCTAAAGAGCGACTCATTGGCCCCAAAGCCCTCTTCTTCCACATGGGAGATTACCATCTCC GTCTCCGCAAGCTCGTCCAGTCAGCTCTTTCTCTCCACCGTCTCCGCAGCTTGGTCGGAGATGTCTCCTCCCTCACCCTCTCCGCCTTGGATTCTTGGCA CGGCGGCCAGATCGTTACCACATATGAACAACTCAAAATGTTGTCGTTCGAAGTTGGAATCCTGGCGATTTTCGGACACCTGGAAGGGCATTACAGGACA GAGTTGAAAATGAACTATGGCATCGTTGAAAAAGGCTACAATTCTTTTCCCACCTCTGTTCCTGGATCTCCTTACAAAAGGGCTCTTACGGCGAGGAGGA AGCTAAATGAGATATTAGGGGCCATAATTAGCGAGAGGAAGGAGAAGAAGTTACTAGAGAAGGACCTGTTGGGCTGTTTACTAAACTCCAAGGACCAAAG GGGAGAGGAGTTGACCGACGACCAAGTTGCCGACAACATCATCGGAGTTCTGTTCGCCGCTCAGGACACGACGGCCAGTGCCATGACTTGGATTATCAAG TACCTCCACGACAACCCCAAACTTCTCGAGGCCGTCAAGGCTGAACAGAAGGCAATTCAAGAATTGAATGAAACAGACAAGCGTAGTAGTAGTAGTAGTA ATGAGACGACGGTGACTTGGAGTCAAACTCGTAAAAATATGCCTTTCACTCACAAGGTTGTGTTAGAGAGCCTGAGGATGGCAAGCATTATAGCGTTCAC GTTTAGAGAAGCAGTCACTGACGTCGAATACAAAGGGTACCTTATTCCAAAAGGTTGGAAGGTGATGCCCTTATTCAGGAACATTCATCACAATCCAGAA TATTTCAGTGATCCTCATAAATTTGAACCTTCAAGATTTGAGGTTGCAGCAAAGGCGAACACATTTATGCCATTTGGAAATGGGGTGCATGCTTGTCCAG GAAATGAGCTTGCCAAGCTGGAGATGCTCATCTTCATCCACCATCTGGTCACCAAGTACAGGTGGGAAGTGGTTGGAGATGAAAGTGGGACACAGAACTG CCCATTTCCAGTGCCAATGAATGGACTCCCAGCTAGATTTTGGAATACAACAACACCAAGTTCCCAGCACCTTAACTAA
AA sequence Show only first row Show all	>Lus10042652 pacid=23182042 polypeptide=Lus10042652 locus=Lus10042652.g ID=Lus10042652.BGIv1.0 annot-version=v1.0 MGDGFFLNILLLVVVFIIIIIIIITLSCYLLLITKIRKPHLLPPGSMGWPVVGETLQLYSQDPSIFFSSKQKRYGEIFKTHILGCPCIMLASPEAARFVL VTQAHLFKPTYPKSKERLIGPKALFFHMGDYHLRLRKLVQSALSLHRLRSLVGDVSSLTLSALDSWHGGQIVTTYEQLKMLSFEVGILAIFGHLEGHYRT ELKMNYGIVEKGYNSFPTSVPGSPYKRALTARRKLNEILGAIISERKEKKLLEKDLLGCLLNSKDQRGEELTDDQVADNIIGVLFAAQDTTASAMTWIIK YLHDNPKLLEAVKAEQKAIQELNETDKRSSSSSNETTVTWSQTRKNMPFTHKVVLESLRMASIIAFTFREAVTDVEYKGYLIPKGWKVMPLFRNIHHNPE YFSDPHKFEPSRFEVAAKANTFMPFGNGVHACPGNELAKLEMLIFIHHLVTKYRWEVVGDESGTQNCPFPVPMNGLPARFWNTTTPSSQHLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10042652 [exp]	0	1
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10034061 [exp]	1.0	0.9108
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10023009 [exp]	3.2	0.8698
AT4G18130		PHYE	phytochrome E (.1)		Lus10011967 [exp]	6.9	0.8482
					Lus10018336 [exp]	13.7	0.7981
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10001396 [exp]	18.0	0.8099
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10007308 [exp]	18.1	0.8379
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005878 [exp]	21.2	0.7847
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10040868 [exp]	22.1	0.8049
AT1G07220			Arabidopsis thaliana protein o...		Lus10040665 [exp]	22.2	0.7999
AT1G07220			Arabidopsis thaliana protein o...		Lus10018239 [exp]	25.4	0.8081

Compare expression of checked genes

Lus10042652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.