Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000488 [exp] 62 / 3e-12 ND / Lus10015596 [exp] 56 / 3e-10 ND 41 / 2e-04 Lus10041342 [exp] 56 / 1e-09 AT5G65005 44 / 6e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10002570 [exp] 45 / 3e-06 ND / Lus10032852 [exp] 43 / 3e-05 AT3G09510 62 / 2e-10 Ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042653 pacid=23181795 polypeptide=Lus10042653 locus=Lus10042653.g ID=Lus10042653.BGIv1.0 annot-version=v1.0 ATGAAAAGCAATCAAGGGGGCCCTGAGATCCATGCTGATGATGAGTATTTCTGCTACGAGCAAGATCCTTGTATCATCGCGGGCTACGAAGTTGTTCTAT TTACCTCTGGTGGGATTGTTTTTTATGGGAGGGCATGGTGTCTATTTTTTCAGGAGCCTTTGGTGGCGAAAGCTTGGCCCATACTAACGGTCGTTAGGCT ATCTGTCACGCTGGTAGGCACGATCAATATGTTGTGGGATTGTAAGGTTCTTGTGATGGCTCTTAAGCAGCCGTCGGAGGGGTGGCCTTGGGCGTGTCTT CAGCTTAACCCATCTATTCAGGTGTCCCATTGCCAAAGATCGAGACTTGTTTTGGTTGATCATATTGCCAGATTAGCGAGAGAAGGTAATGTAGCACCAG GATGGGTAGCTGAATTGTAA
AA sequence Show only first row Show all	>Lus10042653 pacid=23181795 polypeptide=Lus10042653 locus=Lus10042653.g ID=Lus10042653.BGIv1.0 annot-version=v1.0 MKSNQGGPEIHADDEYFCYEQDPCIIAGYEVVLFTSGGIVFYGRAWCLFFQEPLVAKAWPILTVVRLSVTLVGTINMLWDCKVLVMALKQPSEGWPWACL QLNPSIQVSHCQRSRLVLVDHIARLAREGNVAPGWVAEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10042653 [exp]	0	1
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10007367 [exp]	4.6	0.9181
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006244 [exp]	8.0	0.9146
AT4G29035			Plant self-incompatibility pro...		Lus10022825 [exp]	8.8	0.9119
					Lus10017869 [exp]	9.8	0.9109
					Lus10038154 [exp]	10.4	0.9027
AT3G61680			alpha/beta-Hydrolases superfam...		Lus10040915 [exp]	11.5	0.8274
AT4G18770	MYB	ATMYB98	myb domain protein 98 (.1)		Lus10042111 [exp]	12.7	0.9015
AT4G01550	NAC	ANAC069, NTM2	NAC with Transmembrane Motif 2...		Lus10010098 [exp]	13.4	0.8017
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10013055 [exp]	13.8	0.9098
					Lus10042024 [exp]	13.9	0.8991

Compare expression of checked genes

Lus10042653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.