Plant FIBer expression Database

Lus10042654 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42890 186 / 8e-61 ATSCP2 sterol carrier protein 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021727
[exp]
241 / 7e-83 AT5G42890 185 / 5e-62 sterol carrier protein 2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G126200
[exp]
187 / 1e-61 AT5G42890 181 / 3e-60 sterol carrier protein 2 (.1)
Potri.014G029300
[exp]
181 / 4e-59 AT5G42890 169 / 9e-56 sterol carrier protein 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0311 SCP2 PF02036 SCP2 SCP-2 sterol transfer family
Representative CDS sequence
>Lus10042654 pacid=23181811 polypeptide=Lus10042654 locus=Lus10042654.g ID=Lus10042654.BGIv1.0 annot-version=v1.0
ATGGCTGCCACTGACCTCAAGTCCCTCTTCATTATTGACCAACTCAAAGGCTTCCTCGAGACTGACGAAGGCCAGGAGATCAAGAAGAAGATCAATCTCG
TCTATCAGTTCAACATCGCTCCCAAGAAAATTGGGTTCGAAGAGGTGATTTACACTATTGATCTCAAGAAAGGAGAGGTCACTCAAGGGCCATATGAAGG
AGGGAAAGCTGATGCGGTATTTTCAATCAAGGATGATGATTTTGTGAAGCTTGCATTGGGGAAGATGAACCCTCAGATTGCTTTCATGAGGGGAGCTCTG
AAGATCAAGGGCAGCTTGAGTGCAGCTCAGAAGTTCACTCCTGACATCTTCCCAAAGCCTGCCAAGATATGGGGAATAGCTACGGTGTTTTACTTCAGAG
CAAATCATAAAATTGCTCTCGAACTCATGTATTTTTTCTCGTTTCCTGTCCCAACTCCTCATGGTTTGGAGAAATGGGGTATAATCCCAATGTTCATTTC
TGCAACTCGGTACTGCCAGGTTTATAAGCCTGAGATGTCTACTGCTGGTGTACTCTTAATTGGTAGAAAGATTGGAGTAGCAGATACTCCCTACCAGCAT
AACTAG
AA sequence
>Lus10042654 pacid=23181811 polypeptide=Lus10042654 locus=Lus10042654.g ID=Lus10042654.BGIv1.0 annot-version=v1.0
MAATDLKSLFIIDQLKGFLETDEGQEIKKKINLVYQFNIAPKKIGFEEVIYTIDLKKGEVTQGPYEGGKADAVFSIKDDDFVKLALGKMNPQIAFMRGAL
KIKGSLSAAQKFTPDIFPKPAKIWGIATVFYFRANHKIALELMYFFSFPVPTPHGLEKWGIIPMFISATRYCQVYKPEMSTAGVLLIGRKIGVADTPYQH
N

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G42890 ATSCP2 sterol carrier protein 2 (.1) Lus10042654
[exp]
0 1
AT5G41050 Pollen Ole e 1 allergen and ex... Lus10041541
[exp]
6.6 0.7653
AT2G02850 ARPN plantacyanin (.1) Lus10018938
[exp]
8.3 0.7605
AT2G02850 ARPN plantacyanin (.1) Lus10028641
[exp]
17.8 0.7413
AT5G64816 unknown protein Lus10025266
[exp]
18.4 0.7230
AT2G02850 ARPN plantacyanin (.1) Lus10028640
[exp]
18.4 0.7256
AT1G17930 Aminotransferase-like, plant m... Lus10027047
[exp]
20.4 0.7627
AT5G41050 Pollen Ole e 1 allergen and ex... Lus10012553
[exp]
22.8 0.7363
AT1G67400 ELMO/CED-12 family protein (.1... Lus10015790
[exp]
26.0 0.7502
AT5G21060 Glyceraldehyde-3-phosphate deh... Lus10034077
[exp]
34.4 0.7026
AT4G01040 Glycosyl hydrolase superfamily... Lus10005946
[exp]
35.2 0.7127

Lus10042654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.