Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25000 560 / 0 AMY1, AMY3, ATAMY1 alpha-amylase-like (.1) AT1G76130 337 / 1e-112 ATAMY2, AMY2 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) AT1G69830 343 / 1e-109 ATAMY3, AMY3 alpha-amylase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021728 [exp] 806 / 0 AT4G25000 563 / 0.0 alpha-amylase-like (.1) Lus10036717 [exp] 365 / 8e-118 AT1G69830 1175 / 0.0 alpha-amylase-like 3 (.1) Lus10037211 [exp] 361 / 2e-116 AT1G69830 1156 / 0.0 alpha-amylase-like 3 (.1) Lus10021836 [exp] 343 / 3e-115 AT1G76130 700 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) Lus10013270 [exp] 355 / 4e-114 AT1G69830 1180 / 0.0 alpha-amylase-like 3 (.1) Lus10030793 [exp] 355 / 1e-111 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G126300 [exp] 646 / 0 AT4G25000 591 / 0.0 alpha-amylase-like (.1) Potri.014G029400 [exp] 646 / 0 AT4G25000 580 / 0.0 alpha-amylase-like (.1) Potri.017G093200 [exp] 363 / 1e-116 AT1G69830 514 / 6e-168 alpha-amylase-like 3 (.1) Potri.002G014300 [exp] 337 / 2e-112 AT1G76130 709 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) Potri.010G092900 [exp] 349 / 9e-112 AT1G69830 1236 / 0.0 alpha-amylase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF07821 [flax] [poplar] Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain CL0058 [flax] [poplar] Glyco_hydro_tim PF00128 [flax] [poplar] Alpha-amylase Alpha amylase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10042655 pacid=23182002 polypeptide=Lus10042655 locus=Lus10042655.g ID=Lus10042655.BGIv1.0 annot-version=v1.0 ATGAACAAGTTTCCTAGTTGTACCTCGCTCTGTTTCTTCTCCATCTTCCTTTGCTTCTCCCCTTCGCTCTCCACCCCTGCCATCCTATTTCAGGGATTCA ATTGGGAGTCAAGCAGCAAGTCAGGAGGATGGTATAACTCACTCCAGAATACCACTTCTGACCTCGCCGCCGCCGGAGTTACCCGTGTCTGGCTTCCTCC GCCGTCTCAGTCAGCTGCCCAGCAAGGATACCTTCCAGGAAGGCTGTACGATTTGAACGCGTCGAGCTACGGAAACCAAGCCGAATTAAAATCCCTAATT TCAAACCTGAATCAGAAAGGAATCAAAGCCATCGCCGATATCGTCATCAATCATAGGACCGCCGAGAGGAAAGACGACAGAGGGATATGGGCAATCTTCG AAGGTGGCACCCCGGACGATCGCCTTGATTACGGCCCATCCTACATCTGCAAGGACGACACCGAGTATTCCAACGGACAGGGGAATCTCGATTCCGGTGC AGACTTCGCAGCTGCCCCCGATATGGACCATCTAAACCCTAGACTCCAGTCCGAGCTCTCCGATTGGATGAACTGGCTCAAAACGGACATCGGATTCCAC GGCTGGAGATTCGATATGGTGAAGGGTTACGCTGCGGGAGTGTCCAAGCTGTATATGGAGCGGACAGCGCCGGAGTTCGCGGTGGGGGAGAAGTGGGAAT CGCTTGCTTACGGTCCAGACGGAAAGCCTGATGTGAACCAGGATGCTCACCGTGGGGATTTGAAGGATTGGGTTGAGGGTGCAGGTGGAGTAGTGAAGGC ATTTGATTTCACAACGAAAGGGATTCTTCAGGCTGCTGTGGAAGGGGAGCTGTGGAGGTTAAAGGACTCGAATGGGAACCCACCGGGGTTAATCGGGTTG ATGCCCGATAACGCAGTAACGTTTGTAGATAATCACGATACGGGTTCCACTCAGAAACTGTGGCCCTTCCCGTCAGATAAAGTTATGCTGGGCTACGCAT ACATCCTTACTCATCCTGGAACCCCCACCATCTTCTACGATCACATGTTCGAATGGGGGATGAAGGAGCCGATCACAAAGTTAGCAGCTGTGAGGAATGC TTACGGGATTACGTCCACCAGCATCGTCAACATCTTAGCTGCTGAATCCAACCTATATGTTGCAGCCATTAATGATAATATTATTATGAAAATCGGACCC AAAATGGACCTAGGGAATCTCATTCCTACCAATTTCCAGCCGGTTACGTGGGGTGATAGTTACTGTGTTTGGATCAAGAAGTAA
AA sequence Show only first row Show all	>Lus10042655 pacid=23182002 polypeptide=Lus10042655 locus=Lus10042655.g ID=Lus10042655.BGIv1.0 annot-version=v1.0 MNKFPSCTSLCFFSIFLCFSPSLSTPAILFQGFNWESSSKSGGWYNSLQNTTSDLAAAGVTRVWLPPPSQSAAQQGYLPGRLYDLNASSYGNQAELKSLI SNLNQKGIKAIADIVINHRTAERKDDRGIWAIFEGGTPDDRLDYGPSYICKDDTEYSNGQGNLDSGADFAAAPDMDHLNPRLQSELSDWMNWLKTDIGFH GWRFDMVKGYAAGVSKLYMERTAPEFAVGEKWESLAYGPDGKPDVNQDAHRGDLKDWVEGAGGVVKAFDFTTKGILQAAVEGELWRLKDSNGNPPGLIGL MPDNAVTFVDNHDTGSTQKLWPFPSDKVMLGYAYILTHPGTPTIFYDHMFEWGMKEPITKLAAVRNAYGITSTSIVNILAAESNLYVAAINDNIIMKIGP KMDLGNLIPTNFQPVTWGDSYCVWIKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25000		AMY1, AMY3, ATA...	alpha-amylase-like (.1)		Lus10042655 [exp]	0	1
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10004403 [exp]	2.8	0.8179
AT4G29850			Eukaryotic protein of unknown ...		Lus10016385 [exp]	5.0	0.8180
AT4G29850			Eukaryotic protein of unknown ...		Lus10019737 [exp]	8.8	0.8056
AT3G06240			F-box family protein (.1)		Lus10037892 [exp]	10.0	0.7911
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10025404 [exp]	13.0	0.7583
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Lus10007818 [exp]	19.8	0.7479
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Lus10039576 [exp]	19.8	0.7170
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10043076 [exp]	21.5	0.7502
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042678 [exp]	22.5	0.7667
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Lus10032499 [exp]	24.2	0.7661

Compare expression of checked genes

Lus10042655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.