Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33400 835 / 0 Vacuolar import/degradation, Vid27-related protein (.1) AT3G19240 773 / 0 Vacuolar import/degradation, Vid27-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021729 [exp] 1126 / 0 AT4G33400 905 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Lus10019860 [exp] 794 / 0 AT3G19240 908 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Lus10014053 [exp] 790 / 0 AT3G19240 900 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G029600 [exp] 959 / 0 AT4G33400 894 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Potri.002G126500 [exp] 956 / 0 AT4G33400 914 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Potri.009G102000 [exp] 808 / 0 AT3G19240 877 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Potri.004G141300 [exp] 796 / 0 AT3G19240 893 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF08553 [flax] [poplar] VID27 VID27 C-terminal WD40-like domain
Representative CDS sequence Show only first row Show all	>Lus10042656 pacid=23181659 polypeptide=Lus10042656 locus=Lus10042656.g ID=Lus10042656.BGIv1.0 annot-version=v1.0 ATGGGAGCTGCAAATAGCCGCGAGAACCTGGAGCTATCGGATTCAGAGTCTGAGTATGAGGAAGAGAGCGAAGAAGCTGGAGAAGATGCGAATTACAACG ACGCTACCGAAGAGACGCCGGAAAAGTCTTCTTCCTCTACACGGCGCCCAAAAACTCCGGGGTCTTTAGATGATGTGGAAGCTCGACTGAAAGCATTGAA GCTCAAATACCCTACCGCAACGACGAATCAGAAGGGTAAAAACCCCAATTTGCAGAACGAAGTGAAGCTTTATCTTCATCTCGGCGGTAACACTCCCAAG GCAAAATGGGTCGTTTCTGAGAAGCTCACTTCTTACTCGTTTCTGAAGACCACGAAGGTGGGTGTCCATGGCGGAGAAAATGAGGAAGACGAAGATTCGG AATCAGAAACTGATGGCGATGGTTGGTGGGTTTTGAAGGTGAGTAATAAAGTTAGAGTCAAAGTTGATGCAGAGATGCAAGTAAAGACTTTCAAAGACCA GCGACGTGTTGACTTCGTGGATCAGGGTGTGTGGGCGATTAAGTTCTTTGGCGATGAGGATTATCAGGTGTTTGTTAGCAAGTACAGGGACTGCTTATTT GAGAATACTTACGGGTATGAAGCAAATGATGAGAATCAAATGAAGGTTTACGGAAAGGAATTCATTGGGTGGGCAAATCCGGAGAAGGCTGACGATTCAA TGTGGGAAGATGCAGAAGACAGTTTCTCGAGAAGCCCCCAGCTAGTAACTCCTGTGAGGACAAATCAGGATTTGACAGAAGAATTTGAGGAGGTGGCCAA CGATGGGATACAGAGCTTAGCATTGGGTGCACTGGATAACAGCTTTCTGGTGGGAGATTCAGGTATCCAAGTCGTCAAAAACTTTAGTCATGGTATTCAA GGGAAAGGTGTTTATGTTAAATTTGGAAAAGAGCAAAAGGCTGCGGCTTCAAGTTTGGTTGACTCCACTCCTAAGAAGGCACTTCTTATGCGGGCTGAGA CAAATATGTTGCTCATGAGTCCATTAAATGATGCTCAACCACATGCCAGGGGGCTGCATCAGTTTGATATCGAGACTGGAAAAGTAGTTACTGAGTGGAA GTTTGAGAAGGATGGGACTGATATAACCATGAGGGATATTGTGAATGACAGCAAGGGTGCTCAGTTGGACCCATCAGGGTCAACATTTCTGGGATTGGAT GATAATCGTCTTTGCAGGTGGGATATGCGTGATCGCCATGGGATCGTTCAAGATCTTGTCACTTCCAGTGCCCCTGTACTTAACTGGGCTCAAGGCCATC AGTTCTCAAGGGGGACTAACTTTAGGTGCTTTGCAAGCACTGGGGATGGATCAATTGTTGTGGGCTCCCTTGATGGAAAGATTCGCTTGTATTCGAGTAG TTCTATGAGGCAGGCTAAGACAGCTTTCCCTGGCCTTGGCTCTCCTATTACTCACGTTGATGTTACCTTCGATGGAAGATGGATATTGGGCACAACTGAT ACCTATCTGATCCTCATCTGTACTTTGTTCACGGACAAGGATGGCAAGACAAAAACTGGTTTCGGTGGTCGTATGGGAAACAGAATTGCAGCTCCACGAC TACTGAAGCTGAATCCTTTGGATTCACATTTAGCTGGGGTTAATAACAAATTTCGCAATGCTCAGTTTTCATGGGTAACGGAGGACGGGAAACAGGAGAG GCATTTGGTTGCAACGGTTGGAAAGTTCAGTGTGATTTGGAACTTCCAACAGGTGAAGAATGGGAGCCATGAATGCTATAGGAACCAGGAAGGCCTAAAA AGCTGCTATTGTTACAAGATAGTGCTAAAGGATGACTCTATTGTGGATAGTCGCTTCATGCATGACAAGTTTGCTGTGACCGACTCTCCAGAAGCTCCCC TTGTGATTGCAACGAACATGAAAGTCAGCTCTTTTTCTGTTTCTAGAAGGAAGTGA
AA sequence Show only first row Show all	>Lus10042656 pacid=23181659 polypeptide=Lus10042656 locus=Lus10042656.g ID=Lus10042656.BGIv1.0 annot-version=v1.0 MGAANSRENLELSDSESEYEEESEEAGEDANYNDATEETPEKSSSSTRRPKTPGSLDDVEARLKALKLKYPTATTNQKGKNPNLQNEVKLYLHLGGNTPK AKWVVSEKLTSYSFLKTTKVGVHGGENEEDEDSESETDGDGWWVLKVSNKVRVKVDAEMQVKTFKDQRRVDFVDQGVWAIKFFGDEDYQVFVSKYRDCLF ENTYGYEANDENQMKVYGKEFIGWANPEKADDSMWEDAEDSFSRSPQLVTPVRTNQDLTEEFEEVANDGIQSLALGALDNSFLVGDSGIQVVKNFSHGIQ GKGVYVKFGKEQKAAASSLVDSTPKKALLMRAETNMLLMSPLNDAQPHARGLHQFDIETGKVVTEWKFEKDGTDITMRDIVNDSKGAQLDPSGSTFLGLD DNRLCRWDMRDRHGIVQDLVTSSAPVLNWAQGHQFSRGTNFRCFASTGDGSIVVGSLDGKIRLYSSSSMRQAKTAFPGLGSPITHVDVTFDGRWILGTTD TYLILICTLFTDKDGKTKTGFGGRMGNRIAAPRLLKLNPLDSHLAGVNNKFRNAQFSWVTEDGKQERHLVATVGKFSVIWNFQQVKNGSHECYRNQEGLK SCYCYKIVLKDDSIVDSRFMHDKFAVTDSPEAPLVIATNMKVSSFSVSRRK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33400			Vacuolar import/degradation, V...		Lus10042656 [exp]	0	1
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	1.7	0.9765
AT1G16630			unknown protein		Lus10006845 [exp]	1.7	0.9788
					Lus10037590 [exp]	2.8	0.9788
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10007522 [exp]	2.8	0.9749
AT2G23530			Zinc-finger domain of monoamin...		Lus10000845 [exp]	3.2	0.9731
AT5G42330			unknown protein		Lus10013229 [exp]	3.2	0.9642
AT4G14330			P-loop containing nucleoside t...		Lus10021167 [exp]	3.5	0.9702
AT4G22860			Cell cycle regulated microtubu...		Lus10006677 [exp]	4.0	0.9661
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10030746 [exp]	4.2	0.9642
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	6.0	0.9566

Compare expression of checked genes

Lus10042656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.