Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45474 284 / 6e-97 LHCA5 photosystem I light harvesting complex gene 5 (.1.2) AT3G47470 158 / 2e-47 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 (.1) AT3G61470 149 / 7e-44 LHCA2 photosystem I light harvesting complex gene 2 (.1) AT1G19150 131 / 5e-37 LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA6, LHCA2*1, LHCA2*1, LHCA2*1, LH photosystem I light harvesting complex gene 6 (.1) AT1G61520 114 / 2e-30 LHCA3*1, LHCA3*1, LHCA3*1 photosystem I light harvesting complex gene 3 (.1.2.3) AT1G29930 98 / 2e-24 LHCB1.3, CAB140, CAB1 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) AT3G54890 98 / 2e-24 LHCA1 photosystem I light harvesting complex gene 1 (.1.2.3.4) AT1G29920 98 / 3e-24 AB165, LHCB1.1, CAB2 LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1, chlorophyll A/B-binding protein 2 (.1) AT1G29910 98 / 3e-24 AB180, LHCB1.2, CAB3 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) AT2G34430 97 / 6e-24 LHCB1.4, LHB1B1 light-harvesting chlorophyll-protein complex II subunit B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021730 [exp] 398 / 1e-141 AT1G45474 369 / 2e-130 photosystem I light harvesting complex gene 5 (.1.2) Lus10021663 [exp] 160 / 3e-48 AT3G47470 434 / 2e-156 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Lus10001644 [exp] 160 / 4e-48 AT3G47470 437 / 3e-157 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Lus10011361 [exp] 155 / 6e-46 AT3G61470 414 / 6e-148 photosystem I light harvesting complex gene 2 (.1) Lus10006416 [exp] 155 / 1e-45 AT3G61470 404 / 6e-144 photosystem I light harvesting complex gene 2 (.1) Lus10039912 [exp] 127 / 2e-35 AT1G19150 362 / 2e-127 photosystem I light harvesting complex gene 6 (.1) Lus10012297 [exp] 110 / 8e-29 AT1G61520 474 / 2e-171 photosystem I light harvesting complex gene 3 (.1.2.3) Lus10016074 [exp] 110 / 8e-29 AT1G61520 474 / 2e-171 photosystem I light harvesting complex gene 3 (.1.2.3) Lus10015235 [exp] 105 / 8e-27 AT1G76570 445 / 9e-159 Chlorophyll A-B binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G029700 [exp] 309 / 2e-106 AT1G45474 306 / 3e-105 photosystem I light harvesting complex gene 5 (.1.2) Potri.015G062200 [exp] 158 / 2e-47 AT3G47470 442 / 2e-159 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Potri.003G171500 [exp] 150 / 4e-44 AT3G61470 409 / 5e-146 photosystem I light harvesting complex gene 2 (.1) Potri.001G056700 [exp] 147 / 3e-43 AT3G61470 410 / 3e-146 photosystem I light harvesting complex gene 2 (.1) Potri.006G139600 [exp] 138 / 2e-39 AT1G19150 393 / 1e-139 photosystem I light harvesting complex gene 6 (.1) Potri.014G172400 [exp] 108 / 3e-28 AT1G61520 362 / 3e-127 photosystem I light harvesting complex gene 3 (.1.2.3) Potri.005G258600 [exp] 102 / 3e-25 AT1G76570 491 / 6e-176 Chlorophyll A-B binding family protein (.1) Potri.008G041000 [exp] 100 / 6e-25 AT3G54890 395 / 4e-141 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.019G063101 [exp] 99 / 2e-24 AT4G10340 409 / 2e-145 light harvesting complex of photosystem II 5 (.1) Potri.005G239300 [exp] 97 / 6e-24 AT2G34430 485 / 4e-176 light-harvesting chlorophyll-protein complex II subunit B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10042657 pacid=23181792 polypeptide=Lus10042657 locus=Lus10042657.g ID=Lus10042657.BGIv1.0 annot-version=v1.0 ATGGCGGTTGCAACAGGGAGAGCTTTGCTTCTTCAGCCTTGCTCTTCTTCTTCCTCATGTTTCAGTTCGAGGAATGCCCTAAAGCCATTATTATGCTTTG CTGAGCCAGTGAACCAGAGACGTGGCTCACTGACTGCGGTGGTTCATGCTCAGCAGCGACCCACTTGGCTCCCTGGTCTCGACCCTCCGCCTTATCTGGA TGGAAGTTTGCCTGGGGACTATGGATTCGACCCACTTGGGCTTGGAGAAGATCCGGAAAGCTTGAAGTGGTATGTCCAGGCGGAGCTTGTTCATGCCAGG TTCTCCATGCTTGGAGTTGCTGGTATTCTTTTCACAGACTTGCTACGGGTGACTGGAATCAAGAATTTGCCAGTATGGTACGAGGCAGGTGCAGTGAAGT TTGAATTTGCAAGCACAGGGACACTATTGTTTGTCCAACTTCTGTTAATGGGGTATGTTGAGACAAGGAGGTACATGGACTTCATCAGTCCAGGATCTCA GGCCGAAGACGGCTCCTTCTTTGGCCTGGAAGCTTCATTGGAAGGCTTAGAGCCTGGATACCCTGGAGGACCACTACTGAACCCACTCGGACTGGCAAAG GACATAAAGAATGCTGATGGCTGGAAGCTCAAGGAGATCAAGAACGGAAGGCTAGCAATGGTGGCGATGCTGGGGTTCTTTGTGCAGGCAGCTGCGACTC ATAAGGGTCCAATTGATAACCTTGTGGAGCATCTCTCTAACCCATTTCATAAAACCATCATCCAGATCCTCTCTAACTGA
AA sequence Show only first row Show all	>Lus10042657 pacid=23181792 polypeptide=Lus10042657 locus=Lus10042657.g ID=Lus10042657.BGIv1.0 annot-version=v1.0 MAVATGRALLLQPCSSSSSCFSSRNALKPLLCFAEPVNQRRGSLTAVVHAQQRPTWLPGLDPPPYLDGSLPGDYGFDPLGLGEDPESLKWYVQAELVHAR FSMLGVAGILFTDLLRVTGIKNLPVWYEAGAVKFEFASTGTLLFVQLLLMGYVETRRYMDFISPGSQAEDGSFFGLEASLEGLEPGYPGGPLLNPLGLAK DIKNADGWKLKEIKNGRLAMVAMLGFFVQAAATHKGPIDNLVEHLSNPFHKTIIQILSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45474		LHCA5	photosystem I light harvesting...		Lus10042657 [exp]	0	1
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10034053 [exp]	2.0	0.9564
AT4G01150			unknown protein		Lus10012645 [exp]	3.7	0.9531
AT4G24890		ATPAP24, PAP24	ARABIDOPSIS THALIANA PURPLE AC...		Lus10016356 [exp]	4.0	0.9431
AT3G06670			binding (.1.2)		Lus10021547 [exp]	4.6	0.9496
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10015380 [exp]	5.9	0.9475
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10022507 [exp]	6.0	0.9481
AT1G45474		LHCA5	photosystem I light harvesting...		Lus10021730 [exp]	6.2	0.9329
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10029755 [exp]	7.5	0.9439
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10010515 [exp]	8.7	0.9361
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10013591 [exp]	8.7	0.9270

Compare expression of checked genes

Lus10042657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.