Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33330 768 / 0 PGSIP3, GUX2 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) AT1G77130 482 / 6e-164 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) AT3G18660 477 / 2e-161 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) AT1G08990 456 / 2e-154 PGSIP5 plant glycogenin-like starch initiation protein 5 (.1) AT1G54940 454 / 8e-154 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1) AT5G18480 103 / 5e-23 PGSIP6 plant glycogenin-like starch initiation protein 6 (.1) AT1G60470 72 / 3e-13 ATGOLS4 galactinol synthase 4 (.1) AT1G56600 70 / 1e-12 ATGOLS2 galactinol synthase 2 (.1) AT1G09350 69 / 2e-12 ATGOLS3 galactinol synthase 3 (.1) AT4G26250 68 / 3e-12 ATGOLS6 galactinol synthase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021731 [exp] 1197 / 0 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10020890 [exp] 501 / 3e-171 AT3G18660 828 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10018922 [exp] 489 / 5e-166 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10028623 [exp] 487 / 8e-165 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10031507 [exp] 437 / 5e-147 AT1G54940 542 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10029932 [exp] 426 / 4e-142 AT1G54940 527 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10033485 [exp] 378 / 7e-124 AT3G18660 677 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10027949 [exp] 99 / 8e-22 AT5G18480 635 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Lus10000817 [exp] 91 / 3e-20 AT5G18480 329 / 2e-111 plant glycogenin-like starch initiation protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G029900 [exp] 917 / 0 AT4G33330 791 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Potri.007G107200 [exp] 479 / 2e-162 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.005G061600 [exp] 469 / 9e-159 AT3G18660 863 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.013G022900 [exp] 466 / 2e-158 AT1G08990 561 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.005G187900 [exp] 465 / 7e-157 AT1G77130 803 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Potri.005G033500 [exp] 451 / 3e-152 AT1G08990 555 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.013G049100 [exp] 102 / 1e-22 AT5G18480 661 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Potri.010G042000 [exp] 79 / 1e-15 AT1G60470 534 / 0.0 galactinol synthase 4 (.1) Potri.008G189400 [exp] 78 / 3e-15 AT1G60470 545 / 0.0 galactinol synthase 4 (.1) Potri.010G150400 [exp] 76 / 1e-14 AT2G47180 519 / 0.0 galactinol synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10042658 pacid=23181864 polypeptide=Lus10042658 locus=Lus10042658.g ID=Lus10042658.BGIv1.0 annot-version=v1.0 ATGGCGGAAGCAGTAGGGATGATCAATTTTCAAAAGACGATGATGAAGCTGGCTGCCGGCACCCCTTCAAAAGCTCTAATCGTTCGCCTCAACTTGGCCT TCATAGCCCTCTTCCTCATCGCCTATGCCGCCTTGTTCCTCCGACCATCATCCTCCCTCTACTTCGAGAATGCCGGATCCCTCGTTCGATGCTCCTTCCG TAACTGCCCTCACAAGATGGAGGGTGGTGGGGTGAAGATGAAAGCAGTCTTAGAAGAGCCACAACAATCAAAAATTATGGACATGAAGTACTCCTCCGTC CCGAAAACGAAACAAAACGTGACCAAATTCGAGGTTCCTAGCTTCATTGCCTCGATTGCGGGAGGGAGTAAGAGGTCGACATTGAAGATCGGCATGGTCA ACATGGACGCCCAAGACGATGACGTCAGCGAGTGGGCGTCCATCGGAGAGGTGGTCCCCATCCGGTTCGATAAGGTGTCAAGGGAGCTGTTCAAGTGGCA GGACTTGTTCCCGGAGTGGATCGACGAGGAGGAAGAGACCGACGTGCCCACGTGCCCCGAGCTGCCTATGCCAGACTACGGGGCCTACGGGAGCGTGGAC GTGGTGGTGGCAAAACTGCCATGCAGGTATCCTGAGGAAGGTTGGGCGAGGGACGTGCTGAGGCTGCAAGTGCACCTGGTTGCGGCCAATGTGGCGGCGA GGAAAGGGAGGAGGGATTGGAATTGGAGGACCAAAGTGGTGTTTTGGAGCAAGTGTCGGCCGATGGTTGAGATTTTCCGGTGCGACGAGATGGTGAAGAG GGAAGGGGATTGGTGGTTCTACCAGCCGGAGATGACCAGGTTGGAACACAAGGTGTCCCTGCCGGTTGGTTCGTGTAAGCTGTCGCTGCCATTGTGGGGG CAAGGCATCGACGAAGTCTACGATCTGTCAAAGATTAAAACGGCAACACAAACAGTGCACAAGGAAGCATACGCCACCGTTTTACACTCATCAGAGACGT ATGTGTGCGGAGCCATCACACTAGCACAGAGCCTGATCCAAACAGGGACAAAGCGCGACCTAATCCTGCTCCTGGACGCCTCAATCTCCCAACCTAAACG CGACGCCTTAGCTGCAGCCGGCTGGAAGCTCCGCCTCATCAAGCGGATCCGGAGACCTAGAGCCGAGAAATACTCCTACAACGAGTACAACTACAGCAAA TTCCGCCTCTGGCAGCTCACCGACTACGATAAGGTCATTTTCATCGACGCCGACATCATCGTCCTCCGCAACCTCGACCTCCTATTCCACTTCCCCCAAA TGTCCGCCATCGGCAACGACGTCTGGATCTTCAATTCCGGAATCATGGTCCTGGAACCTTCCAATTGCACTTTCAAGATCCTCATGGACAAGCGCAGCGA GATCGTCTCCTACAATGGCGGCGACCAAGGGTTCCTCAACGAAGTCTTCGTCTGGTGGCACCGCCTCCCTCGTCGGATCAATTATCTCAAGAATTTTTGG GCCAACACCACAAATGAAGCAGCCGTGAAGAACGAGATGTTCGGGTCGGATCCCCCCAAGGTGTACTCGATCCACTACCTGGGGCTGAAGCCGTGGAATT GCTACAGGGACTACGATTGCAATTGGAACATAGGGGACCAGCGGGTGTACGCCAGCGACGTAGCGCACGGGCGGTGGTGGAGATTCCACGACGCCATGGA CGAGAAGCTGCAGAGGTTTTGTGGGCTGTCGAAGCAGAGGAAGATTGAGTTAGATTGGGAGAGACGGATGGCGAGGAAAGCTGGGTTTAGCGATGAGCAT TGGAAGATTAATATTACTGATTCTAGACGGAAGCATTTGGTTTCCTAA
AA sequence Show only first row Show all	>Lus10042658 pacid=23181864 polypeptide=Lus10042658 locus=Lus10042658.g ID=Lus10042658.BGIv1.0 annot-version=v1.0 MAEAVGMINFQKTMMKLAAGTPSKALIVRLNLAFIALFLIAYAALFLRPSSSLYFENAGSLVRCSFRNCPHKMEGGGVKMKAVLEEPQQSKIMDMKYSSV PKTKQNVTKFEVPSFIASIAGGSKRSTLKIGMVNMDAQDDDVSEWASIGEVVPIRFDKVSRELFKWQDLFPEWIDEEEETDVPTCPELPMPDYGAYGSVD VVVAKLPCRYPEEGWARDVLRLQVHLVAANVAARKGRRDWNWRTKVVFWSKCRPMVEIFRCDEMVKREGDWWFYQPEMTRLEHKVSLPVGSCKLSLPLWG QGIDEVYDLSKIKTATQTVHKEAYATVLHSSETYVCGAITLAQSLIQTGTKRDLILLLDASISQPKRDALAAAGWKLRLIKRIRRPRAEKYSYNEYNYSK FRLWQLTDYDKVIFIDADIIVLRNLDLLFHFPQMSAIGNDVWIFNSGIMVLEPSNCTFKILMDKRSEIVSYNGGDQGFLNEVFVWWHRLPRRINYLKNFW ANTTNEAAVKNEMFGSDPPKVYSIHYLGLKPWNCYRDYDCNWNIGDQRVYASDVAHGRWWRFHDAMDEKLQRFCGLSKQRKIELDWERRMARKAGFSDEH WKINITDSRRKHLVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10042658 [exp]	0	1
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10021731 [exp]	1.0	0.9823
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10027888 [exp]	2.8	0.9801
AT2G37610			unknown protein		Lus10016559 [exp]	3.6	0.9652
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10013828 [exp]	3.9	0.9797
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Lus10036433 [exp]	5.3	0.9795
AT4G09990			Protein of unknown function (D...		Lus10005829 [exp]	6.0	0.9735
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10019110 [exp]	8.4	0.9731
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10002837 [exp]	9.5	0.9759
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10026541 [exp]	9.8	0.9690
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10010789 [exp]	10.5	0.9658

Compare expression of checked genes

Lus10042658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.