Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47380 703 / 0 Protein phosphatase 2C family protein (.1) AT1G68410 514 / 0 Protein phosphatase 2C family protein (.1.2) AT1G09160 486 / 7e-171 Protein phosphatase 2C family protein (.1.2) AT4G31750 103 / 2e-24 WIN2 HOPW1-1-interacting 2 (.1) AT1G43900 103 / 3e-24 Protein phosphatase 2C family protein (.1) AT5G10740 102 / 4e-24 Protein phosphatase 2C family protein (.1) AT5G24940 102 / 1e-23 Protein phosphatase 2C family protein (.1) AT1G07160 101 / 1e-23 Protein phosphatase 2C family protein (.1) AT1G78200 99 / 2e-23 Protein phosphatase 2C family protein (.1.2) AT5G53140 100 / 7e-23 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021737 [exp] 849 / 0 AT1G47380 701 / 0.0 Protein phosphatase 2C family protein (.1) Lus10009763 [exp] 790 / 0 AT1G47380 719 / 0.0 Protein phosphatase 2C family protein (.1) Lus10006485 [exp] 790 / 0 AT1G47380 728 / 0.0 Protein phosphatase 2C family protein (.1) Lus10020666 [exp] 508 / 8e-180 AT1G09160 662 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10026239 [exp] 111 / 8e-28 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 110 / 1e-27 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 110 / 4e-27 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10020104 [exp] 109 / 9e-27 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10038455 [exp] 107 / 3e-26 AT2G34740 327 / 1e-112 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G031200 [exp] 711 / 0 AT1G47380 717 / 0.0 Protein phosphatase 2C family protein (.1) Potri.002G127300 [exp] 690 / 0 AT1G47380 701 / 0.0 Protein phosphatase 2C family protein (.1) Potri.010G121600 [exp] 531 / 0 AT1G68410 635 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G123600 [exp] 522 / 0 AT1G68410 679 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G021200 [exp] 491 / 4e-173 AT1G09160 642 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G011600 [exp] 491 / 5e-173 AT1G09160 604 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.019G071600 [exp] 112 / 6e-27 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.018G013900 [exp] 107 / 3e-26 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.013G099400 [exp] 110 / 4e-26 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 106 / 9e-26 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10042659 pacid=23182000 polypeptide=Lus10042659 locus=Lus10042659.g ID=Lus10042659.BGIv1.0 annot-version=v1.0 ATGTCAACTGCGAGGGAGCATCACACGGTGCCGCTCTCAGTGCTACTAAAGCGAGAATTAGCTCATGAGAAGGTAGAGAAGCCTGAGCTAGTACACGGGC AGGCCAATCAGAGCAAGAAAGGAGAGGATCTCACTCTCGTCAAAACTGAATGCCAAAGGATCGTTGGCGATGGCGTTACTACGTACTCCGTTTTTGGGTT ATTTGACGGACATAATGGCCGTGCAGCTGCGATCTATACTAAGGAGAATCTTCTAACCAATGTTATATCTGCTATTCCTCAAAACCTTAACCAAGAGGAA TGGCTAGCGGCACTTCCCAGGGCATTAGTTGCAGGCTTCGTCAAAACAGATAAAGAGTTTCAAGTTAGAGGACAACCGTCTGGAACCACTGTTACCTTTG TTATTATTGATGGATGGGTTGTAACTGTTGCATCTGTCGGTGATTCCCGCTGCATACTTGAATCCGCTGAAGGTGATCTCTACTACTTGTCAGCAGATCA CAGGCTCGACTGCAATGAAGAAGAGAGGGATCGTATCACAGCTAGCGGAGGTGAGGTAGGGCGTCTGAATACTGGTGGTGGTGTAGAGATTGGCCCGTTA AGATGCTGGCCTGGTGGCTTGTGTCTTTCACGATCCATCGGAGATTTGGATGTTGGCGAGTTCATTGTTCCTGTTCCTCACGTGAAGCAAGTCAAGTTGT CTACTGGTGGCGGTAGACTTGTCATCTCAAGTGATGGAGTTTGGGATGCTTTGACTGCGGAAATAGCTCTAGACTGCTGCCGTGGAATGCCGCCAGATGC CGCCGCATCCCAAATCGTTAAAGAAGCTGTACATTCCAAGGGACTTAGAGATGACACAACTTGCATTGTCGTTGACATACTTCCAATTGAGAAGCCAGCT GCCCCTCATGCAGCCCCTAGGAAACAACAAGTAAAAGGAGTGTTAAGGTCTATGTTCCGCAAGAAGTCTTCTGAATCAGTTTCTCATATGGACAAAGAAT ATGTTGAACCAGATGTTGTGGAGGAGCTGTTTGAGGAAGGTTCTGCTATGCTTTCGGAAAGGTTACAGACGAAGTATCCACTCTCAAACATGTTCAAGTT GTTCATGTGTGCGGTGTGCCAAGTAGAGATGAGACCTGATGAAGGTGTTTCGATACATGCCGGTTCGGCTTATGTGAGAAGGCTACGCCCCTGGGATGGC CCTTTCCTTTGCCTCAGTTGCCAACAGAAGAAAGAAGCCATGGAAGGGAGAAGACCATGTGGAGGTGGGTGCGATTCCCTTTATAGAAATCATATTGGTT AA
AA sequence Show only first row Show all	>Lus10042659 pacid=23182000 polypeptide=Lus10042659 locus=Lus10042659.g ID=Lus10042659.BGIv1.0 annot-version=v1.0 MSTAREHHTVPLSVLLKRELAHEKVEKPELVHGQANQSKKGEDLTLVKTECQRIVGDGVTTYSVFGLFDGHNGRAAAIYTKENLLTNVISAIPQNLNQEE WLAALPRALVAGFVKTDKEFQVRGQPSGTTVTFVIIDGWVVTVASVGDSRCILESAEGDLYYLSADHRLDCNEEERDRITASGGEVGRLNTGGGVEIGPL RCWPGGLCLSRSIGDLDVGEFIVPVPHVKQVKLSTGGGRLVISSDGVWDALTAEIALDCCRGMPPDAAASQIVKEAVHSKGLRDDTTCIVVDILPIEKPA APHAAPRKQQVKGVLRSMFRKKSSESVSHMDKEYVEPDVVEELFEEGSAMLSERLQTKYPLSNMFKLFMCAVCQVEMRPDEGVSIHAGSAYVRRLRPWDG PFLCLSCQQKKEAMEGRRPCGGGCDSLYRNHIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47380			Protein phosphatase 2C family ...		Lus10042659 [exp]	0	1
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10016549 [exp]	1.7	0.8443
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005322 [exp]	5.5	0.7708
AT1G47380			Protein phosphatase 2C family ...		Lus10021737 [exp]	5.7	0.7923
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10023378 [exp]	12.6	0.7852
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10025461 [exp]	14.4	0.8107
AT1G60070			Adaptor protein complex AP-1, ...		Lus10030640 [exp]	16.2	0.7882
AT1G35780			unknown protein		Lus10033456 [exp]	18.4	0.7588
AT3G43220			Phosphoinositide phosphatase f...		Lus10027650 [exp]	21.0	0.7487
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000715 [exp]	21.8	0.7354
AT2G01480			O-fucosyltransferase family pr...		Lus10013460 [exp]	23.7	0.6859

Compare expression of checked genes

Lus10042659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.