Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44250 436 / 5e-152 Protein of unknown function DUF829, transmembrane 53 (.1.2) AT2G15695 384 / 1e-131 Protein of unknown function DUF829, transmembrane 53 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021741 [exp] 735 / 0 AT5G44250 454 / 3e-159 Protein of unknown function DUF829, transmembrane 53 (.1.2) Lus10019874 [exp] 373 / 4e-127 AT2G15695 457 / 4e-160 Protein of unknown function DUF829, transmembrane 53 (.1) Lus10014042 [exp] 373 / 5e-127 AT2G15695 453 / 2e-158 Protein of unknown function DUF829, transmembrane 53 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G127600 [exp] 587 / 0 AT5G44250 501 / 1e-177 Protein of unknown function DUF829, transmembrane 53 (.1.2) Potri.014G031800 [exp] 579 / 0 AT5G44250 496 / 7e-176 Protein of unknown function DUF829, transmembrane 53 (.1.2) Potri.004G142000 [exp] 439 / 4e-153 AT2G15695 537 / 0.0 Protein of unknown function DUF829, transmembrane 53 (.1) Potri.009G103500 [exp] 432 / 1e-150 AT2G15695 528 / 0.0 Protein of unknown function DUF829, transmembrane 53 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05705 [flax] [poplar] DUF829 Eukaryotic protein of unknown function (DUF829)
Representative CDS sequence Show only first row Show all	>Lus10042660 pacid=23181841 polypeptide=Lus10042660 locus=Lus10042660.g ID=Lus10042660.BGIv1.0 annot-version=v1.0 ATGTTTGGGGGAAGGTATTACTGGGGGAGAAGGGGTGGGGTCAAGAGGGAAGGAATTATAGTGGTGTTTGCTTGGATGTCCAGTCAAGATAAACATCTCA AGACCTATGTCGACCTCTACTCCTCTCTTGGTTGGGATTCTCTCGTTTGTCACTCTCAATTCCTCAACATGTTTTTCCCTGACAAAGCTGAAAGTTTAGC ATTTGAACTTCTCAATGAACTAAATGAGGAGCTTAAGACCGGACCATGCCCTGTGGTCTTGGCACCTTTCTCCGGTGGTCCAAAAGCTTGCATGTACAAG GTTCTTCAGATTGTCGAGGCAAAGAGTGAACTACAATTAAATCCAGATGACTGCCGGTTGGTTAGAGACTGTCTATCAGGCCATATCTATGATTCATGTC CAGTGGATTTTACCAGTGATTTGGGAAGACGATTTGCCGTTCATCCATCTGTATTGAAAACGCAACATCCTCCCCGAATACTATCATGGATGGCTAATGG TATTAGTAATGGCCTTGATGCTCTCTTTCTCAGCCGGTTTGAAGCAGAGCGAGCCCAGTATTGGCAGACTTTGTACTCCTCCGTAAATATTGGGGCCCCG TATCTTTTATTTTGCTCCGAAAAAGATGACCTTGCTCCCTACCAAGTTATTCAAAATTTTGCTGGAAGACTGTCAGAGCTCGGAGCTGATGTAAAGCTTG TGACAATGAATGGCTCTCCTCATGTAGGTCATTATCGGCTGCATCCAGTCGAGTACAAGGCTGCTGTGAGTGATCTTCTCAGGAAGGCAGCCACAGTTTA CTCTAAAAGAATACAGCGACTTGAGGGTGAAGGAATGGGGTTAGGAGGGGGACATGACGAGATTCCTGACCCAATGTCCGAGCTGAGGAAAGCAGCAGGC AGCTCGAACCAGAGCTTTCGAGGAGTGAACAGTGCACCAGCTGCTGATCATTTCATGATGCCAACCTCAGTAGAGTACTATGAAGGTAGAGACGTCCGGT CAGTGCAAGATGAACATAAAGAAGGGTTGATCCGTGTGCGTGGAGGACCTCCAACCATCAACGCTCATGGGGTTTTGGGGCAGATACTCTTTGATGTCTG CGTTCCCAAGTATGTGGAAGACTGGGATATAAAGTCGACAGCTTCATTGAGCAGACACCCTTATACTTCCACACGACGACATACAACGTTTAATCCCATA AAGTGCATTAGTCGGTCAAGGCTGTAG
AA sequence Show only first row Show all	>Lus10042660 pacid=23181841 polypeptide=Lus10042660 locus=Lus10042660.g ID=Lus10042660.BGIv1.0 annot-version=v1.0 MFGGRYYWGRRGGVKREGIIVVFAWMSSQDKHLKTYVDLYSSLGWDSLVCHSQFLNMFFPDKAESLAFELLNELNEELKTGPCPVVLAPFSGGPKACMYK VLQIVEAKSELQLNPDDCRLVRDCLSGHIYDSCPVDFTSDLGRRFAVHPSVLKTQHPPRILSWMANGISNGLDALFLSRFEAERAQYWQTLYSSVNIGAP YLLFCSEKDDLAPYQVIQNFAGRLSELGADVKLVTMNGSPHVGHYRLHPVEYKAAVSDLLRKAATVYSKRIQRLEGEGMGLGGGHDEIPDPMSELRKAAG SSNQSFRGVNSAPAADHFMMPTSVEYYEGRDVRSVQDEHKEGLIRVRGGPPTINAHGVLGQILFDVCVPKYVEDWDIKSTASLSRHPYTSTRRHTTFNPI KCISRSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44250			Protein of unknown function DU...		Lus10042660 [exp]	0	1
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	3.7	0.9728
AT4G28240			Wound-responsive family protei...		Lus10039758 [exp]	4.6	0.9602
AT2G32090			Lactoylglutathione lyase / gly...		Lus10006122 [exp]	5.7	0.9573
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Lus10018294 [exp]	6.2	0.9564
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	7.9	0.9715
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10005997 [exp]	8.5	0.9588
AT3G56200			Transmembrane amino acid trans...		Lus10028165 [exp]	10.5	0.9634
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10032006 [exp]	11.7	0.9601
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031659 [exp]	12.0	0.9630
AT1G60010			unknown protein		Lus10030835 [exp]	14.5	0.9583

Compare expression of checked genes

Lus10042660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.