Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47420 267 / 2e-90 SDH5 succinate dehydrogenase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021742 [exp] 442 / 7e-160 AT1G47420 270 / 1e-91 succinate dehydrogenase 5 (.1) Lus10009768 [exp] 324 / 2e-113 AT1G47420 227 / 3e-75 succinate dehydrogenase 5 (.1) Lus10006480 [exp] 210 / 2e-69 AT1G47420 132 / 7e-39 succinate dehydrogenase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G032400 [exp] 298 / 6e-103 AT1G47420 281 / 6e-96 succinate dehydrogenase 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042661 pacid=23181781 polypeptide=Lus10042661 locus=Lus10042661.g ID=Lus10042661.BGIv1.0 annot-version=v1.0 ATGGAGAAGATGGTGGCGTTTAGGTATCTGTATCGTGCAGCTGCTCTTAGATCTTCGATTGGTTTCACAGCTATCGCCAGTAACCAGCTCCTCCACCATC ACTCGGTTCCTCGATCCTTCTTCACCATCTCCTCCGCTGCTTATCACATCCCTTGCAGTTCCCGGTCTGCTTTAGCGATTGGCATCGGTAGCACAAGGTC CTTTAGTGTGGATGTAGCACACCTGCCTGAGATTAAAGACAACGATGTCTTGTGCGCCTTCAAGGACTTGATGGCTGCTAGTTGGGATGAACTTGATGCA TCAGTCGTCCATGATGTAGAGAATGCATTATCGAAGAACTCCGAGGACAAGGCTGGCCAAGACATCTTGAAGAATGTTTTCCGAGCATCTGAAGCTGTTG AGGAATTTGGCGGGATGATTATGACTCTAAAGATGGAGCTAGATGACAGCATTGGGATGAGTGGCGAGGATGTAAAGCCGTTATCTGATGAGTATGCTAA GGCGATCCGTACTTTTTTTGAACGATACACTGCCTATTTGGATTCATTCACGCCTGATGAGACTTACCTTCGAAAGAAAGTGGAGATGGAGTTGGGTTCA AAAATGATATTTTTGAAGATGAGATGTGCTGGGCTTGGATCAGAGTGGGGCAAGGTTTCCCTGATTGGAACTTCAGGACTTGCTGGATCTTATGTTGAGC AAAGAGCTTAG
AA sequence Show only first row Show all	>Lus10042661 pacid=23181781 polypeptide=Lus10042661 locus=Lus10042661.g ID=Lus10042661.BGIv1.0 annot-version=v1.0 MEKMVAFRYLYRAAALRSSIGFTAIASNQLLHHHSVPRSFFTISSAAYHIPCSSRSALAIGIGSTRSFSVDVAHLPEIKDNDVLCAFKDLMAASWDELDA SVVHDVENALSKNSEDKAGQDILKNVFRASEAVEEFGGMIMTLKMELDDSIGMSGEDVKPLSDEYAKAIRTFFERYTAYLDSFTPDETYLRKKVEMELGS KMIFLKMRCAGLGSEWGKVSLIGTSGLAGSYVEQRA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47420		SDH5	succinate dehydrogenase 5 (.1)		Lus10042661 [exp]	0	1
AT1G47420		SDH5	succinate dehydrogenase 5 (.1)		Lus10021742 [exp]	5.0	0.7784
AT5G54750			Transport protein particle (TR...		Lus10028720 [exp]	8.2	0.7648
AT5G54750			Transport protein particle (TR...		Lus10006060 [exp]	9.6	0.7591
AT1G79010			Alpha-helical ferredoxin (.1)		Lus10023571 [exp]	17.8	0.7319
AT1G42480			unknown protein		Lus10030732 [exp]	19.7	0.6729
AT1G79010			Alpha-helical ferredoxin (.1)		Lus10040456 [exp]	20.9	0.6832
AT4G01897			unknown protein		Lus10038061 [exp]	22.1	0.7075
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Lus10012186 [exp]	22.8	0.6947
AT2G41600			Mitochondrial glycoprotein fam...		Lus10042042 [exp]	22.8	0.6718
AT1G21900			emp24/gp25L/p24 family/GOLD fa...		Lus10041939 [exp]	24.2	0.7373

Compare expression of checked genes

Lus10042661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.