Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 257 / 2e-84 ATCXE13 carboxyesterase 13 (.1) AT2G03550 253 / 6e-83 alpha/beta-Hydrolases superfamily protein (.1) AT3G48690 248 / 1e-80 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT1G49650 242 / 5e-78 alpha/beta-Hydrolases superfamily protein (.1) AT1G49660 234 / 1e-75 ATCXE5 carboxyesterase 5 (.1) AT1G19190 226 / 4e-72 alpha/beta-Hydrolases superfamily protein (.1) AT1G49640 224 / 1e-71 alpha/beta-Hydrolases superfamily protein (.1) AT1G68620 144 / 2e-40 alpha/beta-Hydrolases superfamily protein (.1) AT5G06570 134 / 1e-36 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021745 [exp] 610 / 0 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10014036 [exp] 286 / 1e-95 AT3G48700 321 / 9e-110 carboxyesterase 13 (.1) Lus10027909 [exp] 274 / 4e-91 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10012073 [exp] 267 / 3e-88 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10021743 [exp] 266 / 8e-88 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1) Lus10014033 [exp] 265 / 2e-86 AT1G47480 246 / 3e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10019882 [exp] 257 / 2e-84 AT2G03550 308 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10019884 [exp] 206 / 3e-65 AT1G47480 198 / 3e-62 alpha/beta-Hydrolases superfamily protein (.1) Lus10034068 [exp] 197 / 7e-60 AT1G47480 192 / 9e-58 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G032800 [exp] 439 / 3e-156 AT1G47480 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104900 [exp] 317 / 3e-107 AT1G47480 320 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104300 [exp] 296 / 7e-100 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.004G142400 [exp] 294 / 6e-99 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G032600 [exp] 290 / 3e-97 AT1G47480 297 / 3e-100 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104400 [exp] 289 / 7e-97 AT3G48700 265 / 2e-87 carboxyesterase 13 (.1) Potri.009G104100 [exp] 283 / 1e-94 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104000 [exp] 281 / 1e-93 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G103800 [exp] 252 / 1e-82 AT1G49660 233 / 2e-75 carboxyesterase 5 (.1) Potri.009G105100 [exp] 251 / 3e-82 AT2G03550 274 / 3e-91 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10042662 pacid=23182062 polypeptide=Lus10042662 locus=Lus10042662.g ID=Lus10042662.BGIv1.0 annot-version=v1.0 ATGGATCCATCCAAACAATTAGCTCACGAAATCTTCCCATTCCTCCGTGTATACAAAGACGGTACCATCGAACGACTCGTCGGTACAGAGTCACTGCCTC CGGGTCTCGACTCTGAAACCGACGTCATCTCCAAGGACATCGTTATCTTCCCCGAAACCGGCGTCTCGGCCAGAATCTACCGCCCTAATTCCCTCCTCCA AAACAAGAAGCTCCCGCTCGTCATCTACTACCACGGCGGAGGATTCTTCGCCGCCTCCACGTCCTCCAAAGAGTACCACATCTCCCTCAACCGCCTCGTA TCCGAGTCCAGAGTGATTCTCGTCTCCGTCAATTACCGCCTCGCCCCTGAGAATCCGATTCCGACTCCTTACGACGACGCATTCGCCGCGCTGAGGTGGA TCGTCTCCGGTGAAGGCGAAGAGGTGGAGCCGTGGTTGAAGGATTACGCGGATTTCGAGAGAGTGTATTTGGCAGGGGATAGCTGCGGGGCGAATATGTC GCACCATTTCGCGATGAAAAAGCTGAAGTTGGAGGAGTCGGGTCGGGGTGTGGTGATCCGGGGAGTGGCGATGGTCCATCCGTATTTTTGGGGAAAGGAC CCGATCGGGGCGGAAGTCGGGGACGGGTTCAGGAAATCGATGGTGGATAACTGGTGGATGTTTATCTGTACGTCGGAGAAAGGGTGCGACGACCCGTTAA TCAACCCGTTTGCGGACGGGTCGGGGCAGCTGGAAGGGCTGGGTTGCGAGCGGGTTGTGGTGATTGTGGCGGGTGACGACATATTGAAGGAGAGAGGGAG GGTTTACTACGAGAAATTGGTGGGGTCAGGGTGGAAAGGGGCGGCGGAGTATGTGGAGACGGAAGGGAAAGACCATGTTTTCCATATCGTTGAACCTGAT TGTGAGGAAGCTAAAGTCCTAATCAAACGCCTTGCTTCTTTCTTTCTTTAA
AA sequence Show only first row Show all	>Lus10042662 pacid=23182062 polypeptide=Lus10042662 locus=Lus10042662.g ID=Lus10042662.BGIv1.0 annot-version=v1.0 MDPSKQLAHEIFPFLRVYKDGTIERLVGTESLPPGLDSETDVISKDIVIFPETGVSARIYRPNSLLQNKKLPLVIYYHGGGFFAASTSSKEYHISLNRLV SESRVILVSVNYRLAPENPIPTPYDDAFAALRWIVSGEGEEVEPWLKDYADFERVYLAGDSCGANMSHHFAMKKLKLEESGRGVVIRGVAMVHPYFWGKD PIGAEVGDGFRKSMVDNWWMFICTSEKGCDDPLINPFADGSGQLEGLGCERVVVIVAGDDILKERGRVYYEKLVGSGWKGAAEYVETEGKDHVFHIVEPD CEEAKVLIKRLASFFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10042662 [exp]	0	1
AT3G17800			Protein of unknown function (D...		Lus10041984 [exp]	9.1	0.9488
					Lus10037782 [exp]	10.4	0.9402
AT1G13360			unknown protein		Lus10041461 [exp]	12.7	0.9428
AT5G10260		AtRABH1e	RAB GTPase homolog H1E (.1)		Lus10041702 [exp]	13.6	0.9446
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10026518 [exp]	16.1	0.9438
AT1G56300			Chaperone DnaJ-domain superfam...		Lus10029862 [exp]	17.0	0.9352
AT1G80180			unknown protein		Lus10030064 [exp]	21.8	0.9281
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Lus10036023 [exp]	21.8	0.9339
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10033889 [exp]	24.7	0.9443
AT1G11050			Protein kinase superfamily pro...		Lus10028549 [exp]	25.3	0.9284

Compare expression of checked genes

Lus10042662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.