Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23540 571 / 0 Mov34/MPN/PAD-1 family protein (.1.2) AT1G71230 125 / 2e-33 CSN5B, AJH2 COP9-signalosome 5B (.1) AT1G22920 122 / 5e-32 CSN5A, JAB1, AJH1 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) AT1G10600 52 / 1e-07 AMSH2 associated molecule with the SH3 domain of STAM 2 (.1.2.3) AT1G80210 50 / 1e-06 BRCC36A, AtBRCC36A BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2) AT3G06820 48 / 6e-06 BRCC36B, AtBRCC36B BRCA1/BRCA2-containing complex 36 homolog B, Mov34/MPN/PAD-1 family protein (.1.2) AT3G11270 45 / 4e-05 MEE34 maternal effect embryo arrest 34, Mov34/MPN/PAD-1 family protein (.1.2) AT1G48790 45 / 5e-05 AMSH1 associated molecule with the SH3 domain of STAM 1 (.1) AT5G05780 42 / 0.0005 RPN8A, AE3, ATHMOV34 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) AT4G16144 42 / 0.0005 AMSH3 associated molecule with the SH3 domain of STAM 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021746 [exp] 595 / 0 AT5G23540 618 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10035470 [exp] 567 / 0 AT5G23540 601 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10031085 [exp] 566 / 0 AT5G23540 599 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10012493 [exp] 201 / 5e-65 AT5G23540 219 / 2e-73 Mov34/MPN/PAD-1 family protein (.1.2) Lus10011716 [exp] 118 / 8e-34 AT5G23540 115 / 1e-33 Mov34/MPN/PAD-1 family protein (.1.2) Lus10026947 [exp] 126 / 2e-33 AT1G71230 597 / 0.0 COP9-signalosome 5B (.1) Lus10012494 [exp] 102 / 2e-27 AT5G23540 100 / 1e-27 Mov34/MPN/PAD-1 family protein (.1.2) Lus10011717 [exp] 101 / 4e-27 AT5G23540 102 / 2e-28 Mov34/MPN/PAD-1 family protein (.1.2) Lus10020149 [exp] 96 / 1e-21 AT2G07560 469 / 1e-155 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G127900 [exp] 580 / 0 AT5G23540 567 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.014G032900 [exp] 578 / 0 AT5G23540 563 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.006G275100 [exp] 125 / 2e-33 AT1G22920 565 / 0.0 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) Potri.018G006100 [exp] 125 / 3e-33 AT1G22920 589 / 0.0 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) Potri.010G041200 [exp] 46 / 8e-06 AT1G10600 256 / 3e-87 associated molecule with the SH3 domain of STAM 2 (.1.2.3) Potri.015G045800 [exp] 45 / 5e-05 AT1G48790 581 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Potri.001G172800 [exp] 43 / 0.0002 AT1G80210 484 / 2e-170 BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2) Potri.010G141100 [exp] 42 / 0.0004 AT4G16144 697 / 0.0 associated molecule with the SH3 domain of STAM 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF01398 [flax] [poplar] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence Show only first row Show all	>Lus10042663 pacid=23182048 polypeptide=Lus10042663 locus=Lus10042663.g ID=Lus10042663.BGIv1.0 annot-version=v1.0 ATGGAGAGGCTCCAAAGAATGTTCGCCGGCGCCGGTGGTGGTTTGGGCCACCCTCCTCCTGATTCTCCGACGCTTGATACATCGGAGCAGGTCTATATCT CCTCCCTCGCTCTCCTCAAGATGCTAAAACACGGACGAGCTGGAGTTCCCATGGAGGTGATGGGTCTGATGTTAGGGGAGTTTGTGGATGAATATACGGT TCGTGTGGTTGATGTGTTTGCTATGCCTCAGAGCGGTACTGGGGTTAGCGTTGAAGCGGTCGACCATGTTTTCCAGACTAATATGCTCGATATGCTCAAA CAGACTGGAAGGCCAGAGATGGTGGTTGGTTGGTACCACTCCCATCCAGGGTTTGGTTGTTGGCTCTCAGGTGTTGATATTAACACACAGCAGAGTTTTG AAGCTCTCAATCAACGGGCTGTTGCTGTGGTGGTTGATCCTATTCAGAGTGTTAAAGGGAAAGTGGTGATTGATGCTTTCCGTTCAATCAATCCTCAAAC CATGATGCTTGGCCAAGAACCACGACAGACAACTTCCAATGTTGGCCACCTGAACAAACCATCAATTCAGGCACTTATCCATGGACTGAACAGACATTAC TATTCTATTGCCATCAATTACCGAAAGAATGAACTTGAGGAGAAAATGCTTCTCAACTTGCACAAGAGCAAGTGGACTGATGGATTGACACTCAAGAGAT TCGACCGTCATTCAAAGACCAATGAGCAGACTGTTCAGGAGATGTTGAAATTGGCCAGTAAGTACAACAAAGCAGTGCAAGAAGAAGACGAGCTGTCACC TGAGAAGCTGGCAATCGCAAACGTAGGGAGGCAGGACGCAAAGAAACACCTGGAAGAACATGTCTCTAATTTGATGTCTTCCAACATAGTTCAGACCTTG GGTACCATGCTCGACACTGTTGTCTTCTAG
AA sequence Show only first row Show all	>Lus10042663 pacid=23182048 polypeptide=Lus10042663 locus=Lus10042663.g ID=Lus10042663.BGIv1.0 annot-version=v1.0 MERLQRMFAGAGGGLGHPPPDSPTLDTSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLK QTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRSINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHY YSIAINYRKNELEEKMLLNLHKSKWTDGLTLKRFDRHSKTNEQTVQEMLKLASKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTL GTMLDTVVF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10042663 [exp]	0	1
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10021746 [exp]	1.0	0.8316
AT4G38790			ER lumen protein retaining rec...		Lus10007570 [exp]	28.1	0.7541
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014942 [exp]	37.8	0.8026
					Lus10024524 [exp]	40.7	0.7779
					Lus10012330 [exp]	44.2	0.7819
AT3G13620			Amino acid permease family pro...		Lus10039180 [exp]	47.6	0.7780
AT4G12410			SAUR-like auxin-responsive pro...		Lus10024600 [exp]	66.2	0.7830
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Lus10001214 [exp]	87.4	0.7711
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10014420 [exp]	93.2	0.7686
AT1G75440		UBC16	ubiquitin-conjugating enzyme 1...		Lus10028341 [exp]	103.2	0.7626

Compare expression of checked genes

Lus10042663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.