Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34310 200 / 3e-57 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021747 [exp] 422 / 2e-138 AT4G34310 953 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G034100 [exp] 233 / 1e-68 AT4G34310 1291 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042664 pacid=23181704 polypeptide=Lus10042664 locus=Lus10042664.g ID=Lus10042664.BGIv1.0 annot-version=v1.0 ATGCTCCGCCTATGCTTTGGAGCTCGACGATACTACCGTCGCTTCCCTCCCCTTCGTTCCTTCTCCTCATCCTCATCCTGTCCTCCGCCTCTGCCTCCGC CGTCTTTTTCATCTAAGATTCCCCCCGATGCCTCCAATAGCTTGCAGCTCCCTCCCTACGCCGCCCCAGCACCGATAATCCAGCAGGACAATGGCGCCTT CTCTCCCAATTCCAATTCTTCTTCTTTCCGCCTTAAATCAGCTGTCGTTCTATCTGCCACGCTTGCTTCTGCGGCCATTGCTTCCTACGCTTTGGTCCAT TCCGGCGATCACGCAGAGGCGGCCAAGCCTGACCGGAACCCTAATCCGCTCCACGATGCGGTGGAGGCCGCCGTGCACAAATCGGATGAGTCCTTGAGGA TGATTTTTCATCGGTTTAAGCAGACCGGGGTTGCCGCCTCGGTTCTATGGCAGTCGTTGAGGTCGGTGTTGTCCTCTGCCAACCACGAGGGAGGCGGGGG GGTGGGCGGGGGGGGGGGGGGGCGGAGGGTGGGGGCGGGCGGACCGGGAGTAGATTGGTTGCTGGAGACCGTGTCCGGTAATGGCTCTGATGGTTCTGTG ACGCAGGCTGAGGCAGCCAGGGCCCTTGCTTACTTGATTGCTGATCCTCATGTGTCCGGCACGGTGCTTGCCAGGCCTAATGCTGTCCCCTACTTGCTCC AGTTCATATTTTCGTGTCAGCCAAAGAAAAAGGTCACTTCTTTGGACTTTGGCGCAATTCTGAAGCAGCATTCAAGGCGTAGTTCACTCGGTGTTTCTGA TTCTTTGAAAGGTAGGAGCATGCTTGTAGCTGCCATCATGGATATAGTCACATCCAACTGCGACAGTCTAGAGGAAATATCCTTTAGGCCGGCCTTGTCA GGAAATGCAGCATTGAGGGATATTGCTGCGGCTATTCAAGTCATCGAAGAAGGCGGCTTGCAATTGGATAGGACTGGGGATAATGAGGATGATAAAGATG ATGGTAGGGGGATTAAAGGTATTGGGATCAAGATTTTGGAAGGAACAGCCGTTTTAGGGCTTTAG
AA sequence Show only first row Show all	>Lus10042664 pacid=23181704 polypeptide=Lus10042664 locus=Lus10042664.g ID=Lus10042664.BGIv1.0 annot-version=v1.0 MLRLCFGARRYYRRFPPLRSFSSSSSCPPPLPPPSFSSKIPPDASNSLQLPPYAAPAPIIQQDNGAFSPNSNSSSFRLKSAVVLSATLASAAIASYALVH SGDHAEAAKPDRNPNPLHDAVEAAVHKSDESLRMIFHRFKQTGVAASVLWQSLRSVLSSANHEGGGGVGGGGGGRRVGAGGPGVDWLLETVSGNGSDGSV TQAEAARALAYLIADPHVSGTVLARPNAVPYLLQFIFSCQPKKKVTSLDFGAILKQHSRRSSLGVSDSLKGRSMLVAAIMDIVTSNCDSLEEISFRPALS GNAALRDIAAAIQVIEEGGLQLDRTGDNEDDKDDGRGIKGIGIKILEGTAVLGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10042664 [exp]	0	1
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10010087 [exp]	8.4	0.8834
AT1G52640			Pentatricopeptide repeat (PPR)...		Lus10030887 [exp]	16.1	0.8145
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10013411 [exp]	20.3	0.8738
AT1G17450			B-block binding subunit of TFI...		Lus10000374 [exp]	28.3	0.8556
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Lus10028818 [exp]	37.3	0.8153
AT1G58060			RNA helicase family protein (....		Lus10020816 [exp]	38.3	0.8413
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10018507 [exp]	41.5	0.7837
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039423 [exp]	47.0	0.8235
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10019616 [exp]	47.2	0.8345
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10011850 [exp]	63.6	0.8146

Compare expression of checked genes

Lus10042664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.