Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34310 961 / 0 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021747 [exp] 1500 / 0 AT4G34310 953 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G034100 [exp] 1073 / 0 AT4G34310 1291 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G128201 [exp] 570 / 0 AT4G34310 515 / 8e-174 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07819 [flax] [poplar] PGAP1 PGAP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10042665 pacid=23181687 polypeptide=Lus10042665 locus=Lus10042665.g ID=Lus10042665.BGIv1.0 annot-version=v1.0 ATGGCATCCGAGGTTAATAGGTCTCATATTCATGAACTCGACCAAGATGGCCAAGCTGTCATGGCTGCTTTACTGGCCCCTGAGAGATCTGTGAAATGGC ATGCAAGTTTGGTGGCTCGATTGCTGCTGGAGGACCAAAATCTTCCATTAAACGGTTCTATTTCTGACTGGAGTTCATCACTTCTCTCCACGATTGCTCA TGCTAGTAAAAATGAAGATATTCCATTGTGTGAGGTGGCTCTGTCTGCCTTTTTACTTTCTGTTGAAAGAAGTCCTGGGGCAAGAAAGAAAGTTGCAGAG AGGGGTCTTCCACTGATGAGAGATATTGTTAAGCAGACTAGAAAACACAAGCAGGTGCAAGAGTCATTGGCTAAGGTTTTGGAATTCTTCTCAACTGGAG AGGTGCATTTATCGTTTGAAGAAAGTCAAAGGTGGTCTGGCGTTATGCTGCCCTGGGTCTTTGGCAAATTGTCTTCTGATGCTATGAGAGCTTCAGCAAC GAAATTCCTTTCTGGCATTCTCGACGATCATGGACCATCTTCCATTCCAATTTCTCAAGGATGGCTAGCTCTTTTGCTGAATGAAGCTCTTAATTCTAAT AATACTTCATCTGCGAAGCTAGGCTCTCAGCCTAAAAGTGACAATGTGAAGACTCAAGTTGACCAGTCTAATGTTGTTATTGCTACACAAGCTGCCAATC AGTTAGCAGGTTCTGTTGTTAATCGAGCAGCGATTCAGCACGGATCCACAGAATCTGTTGATGCTTTTCCACTTTCATACCTTCTCTCCCTGGAACCTTT TACTGGGCCACGGAAAAACTTGAAAAAAGATACGGTGCCTAAGCTTAATGTGGCAGATTCGGCAGAGGCAACTGTTAAGGGGATCAAAGCATTGACTGAA TTGTGTTATCAGGATCATTTGTGTCAGGAAAAAATTGTAGATTTTGGGGTATTTTGCTTGCTGAGACGCTTTCTATTGTGTGATGATTACGAGAAGTTGG CTGGAATGGAAACTTATGATGCTTCTAGAGCCCTTGAGACACAACATCATGCTTCAAATGCTACTAATGAGGAGTCTAAGGCTAATGGTAATAGTTTGTC AAGTGTCCGAGTGCCACCTACAGCTCACATGCGCAGACATGCAGCACGGCTGTTGACAGTCCTCTCACCTCTTCAAGGCGTTCAAAAGGCTATTGTGGCA GATAAAGCTCTGTGTAAATGGCTTGAAGACTGTGCAGAAGGAAAGTTACCAGGTTGTGGTGATGCAAAAATGCAGAGCTACGCGAGAGGTATACTCTTGA ATGTCTTCTGTAATTACAATGCTGATATCGAGAGAGCAAGTGGCAGAGGTCCTGAAACTGGATCTACAAATAGAAAGCATGCATGTCCCATGTATGATGA TATGGTGTTTTTGGTTCGACCCGATCTTGCCCATTGGAAACGTTGTGAAAAGATGGGTTATGAGACAGTTCAGAGTGTTAAAACTTCAACAGAGGGATAT TCAGTTGACAACCAGAGTAAATCAGTACCACAGGGTCCAAAGGCTGGTGATCATTCTAATTCCAATCATGAATTTCATGATGATTTTGAAACTGAGGCTC CAGAAATTGATGTTATCTTTGTACATGGTTTACGGGGTGGGCCATTCAAGAGCTGGCGCATTTCTGAGGATAAGACGTCTACTAAATCTGGCTTGGTAGA GAAGATTGACGAGGAAGCAGGAAAACTTGGAACCTTTTGGCCTGGAGAGTGGCTTTCAGCTGATATGCCTCGAGCTAGATTATTTACACTCAAGTACAAG ACAAATCTTACTCAGTGGTCTGGTGCTACTCTGCCGCTTCAGGAAGTCAGCTCCATGTTGTTAGAGAAACTTGTTGCTGCTGGGATCGGGAACCGGCCTG TCATATTTGTGACTCACAGCATGGGAGGCCTTGTCGTCAAGCAGATATTGCATAAAGCAAAGACAGAAAATATAAATAACCTTGTGAACAACACAGTTGG AATCGTGTTCTATAGCTGTCCACATTTCGGAAGCAAGCTAGCAGATATGCCTTGGCGAATGGGTCTTGTATTACGCCCTGCTCCAAGTATAGGGGAGCTA AGGAGTGGGTCTCCGTGGTTGGTAGAGCTTAACGACTTCCTCAGGCAAAGAGAGAAGAAGAAATGGCTGCAAGTACTCAGCTTTTGTGAGACTAAAGTAA CTCCTATAGTTGAAGGCTATGGCGGTTGGGCCTTTCGGGCAGAGATCGTGCCGATGGAATCTGCATATCCTGGATATGGGGAAGTTATTGTCTTGGAGTC GACTGACCATATAAATTCATGCAAACCCATGAGCCCCAGCGATCCTTCTTATACAGAGGTTTTAAAGTTCCTGAAGAAGCTCAAGTCTCGTTATCATTCC TGA
AA sequence Show only first row Show all	>Lus10042665 pacid=23181687 polypeptide=Lus10042665 locus=Lus10042665.g ID=Lus10042665.BGIv1.0 annot-version=v1.0 MASEVNRSHIHELDQDGQAVMAALLAPERSVKWHASLVARLLLEDQNLPLNGSISDWSSSLLSTIAHASKNEDIPLCEVALSAFLLSVERSPGARKKVAE RGLPLMRDIVKQTRKHKQVQESLAKVLEFFSTGEVHLSFEESQRWSGVMLPWVFGKLSSDAMRASATKFLSGILDDHGPSSIPISQGWLALLLNEALNSN NTSSAKLGSQPKSDNVKTQVDQSNVVIATQAANQLAGSVVNRAAIQHGSTESVDAFPLSYLLSLEPFTGPRKNLKKDTVPKLNVADSAEATVKGIKALTE LCYQDHLCQEKIVDFGVFCLLRRFLLCDDYEKLAGMETYDASRALETQHHASNATNEESKANGNSLSSVRVPPTAHMRRHAARLLTVLSPLQGVQKAIVA DKALCKWLEDCAEGKLPGCGDAKMQSYARGILLNVFCNYNADIERASGRGPETGSTNRKHACPMYDDMVFLVRPDLAHWKRCEKMGYETVQSVKTSTEGY SVDNQSKSVPQGPKAGDHSNSNHEFHDDFETEAPEIDVIFVHGLRGGPFKSWRISEDKTSTKSGLVEKIDEEAGKLGTFWPGEWLSADMPRARLFTLKYK TNLTQWSGATLPLQEVSSMLLEKLVAAGIGNRPVIFVTHSMGGLVVKQILHKAKTENINNLVNNTVGIVFYSCPHFGSKLADMPWRMGLVLRPAPSIGEL RSGSPWLVELNDFLRQREKKKWLQVLSFCETKVTPIVEGYGGWAFRAEIVPMESAYPGYGEVIVLESTDHINSCKPMSPSDPSYTEVLKFLKKLKSRYHS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10042665 [exp]	0	1
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10021747 [exp]	4.5	0.7292
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10003684 [exp]	8.1	0.7434
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10033033 [exp]	13.9	0.7032
AT2G06040			unknown protein		Lus10034779 [exp]	16.1	0.6672
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Lus10017464 [exp]	17.5	0.6833
AT1G72390			unknown protein		Lus10008132 [exp]	19.0	0.6946
AT1G27900			RNA helicase family protein (....		Lus10036991 [exp]	19.2	0.6827
AT1G17680			tetratricopeptide repeat (TPR)...		Lus10042212 [exp]	22.4	0.7269
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10013661 [exp]	22.4	0.7025
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10022423 [exp]	24.9	0.7033

Compare expression of checked genes

Lus10042665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.