Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15730 376 / 1e-130 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G34420 372 / 4e-129 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50620 360 / 2e-124 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021749 [exp] 593 / 0 AT2G15730 402 / 2e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027910 [exp] 370 / 4e-128 AT2G15730 507 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012072 [exp] 369 / 8e-128 AT2G15730 510 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10002971 [exp] 353 / 7e-122 AT3G50620 451 / 2e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009348 [exp] 351 / 4e-121 AT3G50620 454 / 1e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G034300 [exp] 445 / 8e-158 AT2G15730 491 / 7e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G105200 [exp] 378 / 2e-131 AT2G15730 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G042100 [exp] 370 / 2e-128 AT3G50620 509 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G136900 [exp] 367 / 2e-127 AT3G50620 532 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G143300 [exp] 365 / 1e-126 AT2G15730 563 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042667 pacid=23181935 polypeptide=Lus10042667 locus=Lus10042667.g ID=Lus10042667.BGIv1.0 annot-version=v1.0 ATGAAACAATTAATTCCATCTGGGAATCTCATAACTACTCTTTGTTCCTCCTTGCCAGGAATCGTTGGTTATAAAGACTCCAAAGAAATCTCCACTGGTG TTGAGATTGGTGGTGTTGGCATTTGCTATGTTGTCGAACACATCTGCAACTCTTCCCACATCCAACCCCCCGAGATCCATTTTGTTCACTACCCCAAACC CGTCACATTTAGCCGGGAAGAATGTGTGTGCAATCCTGTCAGGTACTTTGCGATTCTGTCGATGCAGAGATCAGGGAGCGGATGGTTCGAGACGTTGATG AACAGTCACATCAATGTGAGCTCCAACGGAGAAATATTCGGGAAGAAAGATCGGAGGGCCAACGTTTCGTCCATTGTCAATGTGTTGGATAGGGTATACA ATCTTGATTGGTTCAGTAGTGCTTCCAAGAATGAGTGCAATGCAGCTGTTGGGTTTAAATGGATGCTTAATCAGGGGGTGCTGGAACATCACCAAGGAAT AGTGGACTACTTCAACAGGAATGGGGTTCATGCCATTTTCCTGTTTAGGAGGAATTTGATTCGGAGATTGATATCTGTGTTGGCCAATTCCTACGACAAA AGTAAAAAACCATTGAATGGAACCCACAAGTCTCATGTCCACTCAATTGCTGACGCGAAAGTTCTAGCGAAATACAAGCCAAGTTTGAACACATCGACAT TGTTGGCGGAGTTAAGAAGTGTAGATAGTAGAGCTACACGGGCGACTACCTACTTCAAATCCACCCGCCACATTGTTCTCTACTATGAAGATGTTGTCGG AAATCAAACTAAACTGAAAGAAGTTCAAGACTTTCTCAGGTTGCCTTACAGAGAACTGACTAGCCGGCAGATCAAGATACACAGCGGAGATTTGTCGGAA CAGATTGCAAATTATGAACAAGTTCAGGAGGTACTGAAGGGAACAACATATGAATCCTTTCTTCATCAGGATTATGAGATATAG
AA sequence Show only first row Show all	>Lus10042667 pacid=23181935 polypeptide=Lus10042667 locus=Lus10042667.g ID=Lus10042667.BGIv1.0 annot-version=v1.0 MKQLIPSGNLITTLCSSLPGIVGYKDSKEISTGVEIGGVGICYVVEHICNSSHIQPPEIHFVHYPKPVTFSREECVCNPVRYFAILSMQRSGSGWFETLM NSHINVSSNGEIFGKKDRRANVSSIVNVLDRVYNLDWFSSASKNECNAAVGFKWMLNQGVLEHHQGIVDYFNRNGVHAIFLFRRNLIRRLISVLANSYDK SKKPLNGTHKSHVHSIADAKVLAKYKPSLNTSTLLAELRSVDSRATRATTYFKSTRHIVLYYEDVVGNQTKLKEVQDFLRLPYRELTSRQIKIHSGDLSE QIANYEQVQEVLKGTTYESFLHQDYEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15730			P-loop containing nucleoside t...		Lus10042667 [exp]	0	1
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10039144 [exp]	3.7	0.8305
AT2G33840			Tyrosyl-tRNA synthetase, class...		Lus10029613 [exp]	6.5	0.7537
AT2G15730			P-loop containing nucleoside t...		Lus10021749 [exp]	7.2	0.8230
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010985 [exp]	8.5	0.7496
AT1G17400			unknown protein		Lus10027660 [exp]	13.8	0.6742
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10014632 [exp]	14.9	0.7824
AT1G01700		ATROPGEF2, ROPG...	RHO guanyl-nucleotide exchange...		Lus10014779 [exp]	18.0	0.7215
AT1G03360		ATRRP4	ribosomal RNA processing 4 (.1...		Lus10008171 [exp]	19.7	0.7476
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10011678 [exp]	24.7	0.7205
AT1G01700		ATROPGEF2, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036352 [exp]	30.0	0.7634

Compare expression of checked genes

Lus10042667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.