Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11800 919 / 0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT4G23000 905 / 0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021750 [exp] 1149 / 0 AT4G11800 1487 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G034400 [exp] 989 / 0 AT4G23000 1603 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10042668 pacid=23181847 polypeptide=Lus10042668 locus=Lus10042668.g ID=Lus10042668.BGIv1.0 annot-version=v1.0 ATGGGAGTAGATATGAGGATGAATTTGTCCTTGTTCATGACTATATATGTGTCTTCCATTGTGTTTCTTCTTGTTTTTCACATTATATTCCTTGGACTCT GGTATCTTGGCCTTGTTTCCAGAGTTGCCGCAAAACAGCCAGAGTTAGTCACCATCTTCCAAAATTGTGCTGTTCTCAGTGTAGCCTGCTGTGTATTTTA TAGCCACTGTGGAAATCAAGCTTTTATGAGAGATAGGCCTCTTCAGAGAAGGCACTCTAGTTGGTTTCCTTTTCGGAAGAAAGAAGAGATTAATACATGG CTTGCCCAATTTATCCGCATGAATGAGTTAAAAGACCAGGTCTGCTCATCTTGGTTTGCTCCTGTGGGATCTGCTAGTGATTATCCCCTTTTATCAAAGT GGGTCATTTACGGGGAGATAGGCTGCAGTGGAAATGAATGTGCAGCCACATCCGATGGTATCTCTCCTATATATTCATTGTGGGCCACATTTATTGGTCT TTATATCGCTAACTACGTGGTGGAAAGATCAACTGGGTGGGCTCTTACTCACCCTTTGTCAGTTAAAGAGTATGAGAATTTGAAGAAGAAGCAGATGAAG CCAGATTTCTTGGATATGGTTCCTTGGTATTCAGGGACGTCTGCTGATTTGTTCAAGACAGTGTTCGACCTTTTGGTATCAGTAACTGTATTTGTTGGTC GCTTTGACATGCGCATGATGCAGGCTGCAATGAACAAGGTCCAGGATGGAGTTAAATCAGACCATTTCTATGATCATCTTAGCAAAGATGAAGATCTATG GTTTGACTTCATGGCTGATACAGGGGACGGTGGGAACTCAACTTACAGTGTGGCACGATTACTTGCTCAGCCATCTCTGAGGGTTAGCATAGGAGAATCT ATGCGCTCTCTGCCACGAGCAAAGTTACTTCTTGTGGGAGGAGATCTTGCATATCCTAATCCATCATCATTCACGTACGAAAGACGCTTCTTCTGTCCCT TCGAGTATGCACTACAACCACCCTCTTGGTATAAAGAGGACCAAGTGGCAGCACACAAGCCCGAGTTACCCCATGGAGTGTCTGAACTGGAACAGTATGA TGGACCTCAATGTTTTGCCATTCCTGGAAACCACGATTGGTTTGATGGGCTTCATACTTTCATGAGGTACATATGTCATAAAAGCTGGCTCGGTGGGTGG CTTATGCCCCAAAAGAAGAGTTATTTCGCCTTGCAACTCCCAAAACGGTGGTGGGTCTTTGGTCTTGATCTAGCACTCCATAATGATATTGATGTGTTCC AGTTCAAATTCTTTACCGAAGTAGTAAAAGAGAAGGTGGGAGAAAATGACTCTGTGATCATCATAACGCATGAACCAAATTGGCTTCTCGATTGGTATTG GAATGATGTCTCTGGGAAGAATGTCTCACACCTTATACATGGCTATCTGAAAGGAAGGTGCAAGCTTCGGATGGCTGGGGATTTGCATCATTATATGCGT CATTCACATGTTCCTTCAGATGGACCAGTTGATGTGCAACATCTGATTGTAAATGGATGCGGTGGTGCCTTTTTACACCCCACCCATGTCTTTGGTGACT TTAAGAAAGCTTACGGAACTACCTATGATACCAAGGCCTCATATCCGTCTTTAGAAGACTCCAGCAAGGTCACTACCTCATTTTTCTCTTTGGGCTATCA CACTTTATTTGAGTGGTACAGAGCAGTGGAGAGCGAGCACTTTCCAGACCCTACTGGTCTTCGGGATAGGATAGAACAATGGACGTTTGGGCTTTACCCT GCCTGCATTAAGTATCTCATGTCAGCTTTTGATGTTCCTGAGGTTATGGCTGTCACACGTAGCAATATCTGTAAGAACGGCATGGAAGCACTCTCGAGAG GAGGTGCCATCATCTATTATGCGTCTGTCTTCCTCTACTTCTGGGTTCCGAAGGAGTGGCAATTGGATCCGCATTGGGATGGTGAGCCAAGGATGCCTCA GCAGATGAACCACCACAGGAAGTACCCTAGCAAGTGGAGTGCAGCTGCATATCAGCAGGATCCCATCAATACAGTTAAGATAGTTGACCATTTCGTCATT AGACAAACAGACGAGCCTGGTTTAGGAACAACCAACGGAGAATCAGTGTCTTGCTGA
AA sequence Show only first row Show all	>Lus10042668 pacid=23181847 polypeptide=Lus10042668 locus=Lus10042668.g ID=Lus10042668.BGIv1.0 annot-version=v1.0 MGVDMRMNLSLFMTIYVSSIVFLLVFHIIFLGLWYLGLVSRVAAKQPELVTIFQNCAVLSVACCVFYSHCGNQAFMRDRPLQRRHSSWFPFRKKEEINTW LAQFIRMNELKDQVCSSWFAPVGSASDYPLLSKWVIYGEIGCSGNECAATSDGISPIYSLWATFIGLYIANYVVERSTGWALTHPLSVKEYENLKKKQMK PDFLDMVPWYSGTSADLFKTVFDLLVSVTVFVGRFDMRMMQAAMNKVQDGVKSDHFYDHLSKDEDLWFDFMADTGDGGNSTYSVARLLAQPSLRVSIGES MRSLPRAKLLLVGGDLAYPNPSSFTYERRFFCPFEYALQPPSWYKEDQVAAHKPELPHGVSELEQYDGPQCFAIPGNHDWFDGLHTFMRYICHKSWLGGW LMPQKKSYFALQLPKRWWVFGLDLALHNDIDVFQFKFFTEVVKEKVGENDSVIIITHEPNWLLDWYWNDVSGKNVSHLIHGYLKGRCKLRMAGDLHHYMR HSHVPSDGPVDVQHLIVNGCGGAFLHPTHVFGDFKKAYGTTYDTKASYPSLEDSSKVTTSFFSLGYHTLFEWYRAVESEHFPDPTGLRDRIEQWTFGLYP ACIKYLMSAFDVPEVMAVTRSNICKNGMEALSRGGAIIYYASVFLYFWVPKEWQLDPHWDGEPRMPQQMNHHRKYPSKWSAAAYQQDPINTVKIVDHFVI RQTDEPGLGTTNGESVSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11800			Calcineurin-like metallo-phosp...		Lus10042668 [exp]	0	1
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10004100 [exp]	4.6	0.8737
AT5G28350			Quinoprotein amine dehydrogena...		Lus10018824 [exp]	5.5	0.8972
AT5G11700			unknown protein		Lus10005497 [exp]	6.0	0.8894
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10007734 [exp]	7.5	0.8277
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10002104 [exp]	12.6	0.8650
AT4G11800			Calcineurin-like metallo-phosp...		Lus10021750 [exp]	13.3	0.7955
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Lus10011195 [exp]	13.7	0.8702
AT5G42940			RING/U-box superfamily protein...		Lus10010036 [exp]	16.5	0.8567
AT1G05960			ARM repeat superfamily protein...		Lus10006583 [exp]	17.7	0.8588
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10036133 [exp]	21.4	0.8628

Compare expression of checked genes

Lus10042668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.