Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02940 494 / 1e-170 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT2G48080 424 / 5e-145 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT1G14710 159 / 6e-42 hydroxyproline-rich glycoprotein family protein (.1.2) AT4G36090 128 / 4e-32 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.2), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.3) AT2G17970 124 / 8e-31 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT1G48980 106 / 5e-25 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029637 [exp] 945 / 0 AT4G02940 503 / 4e-174 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10008166 [exp] 691 / 0 AT4G02940 511 / 2e-177 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10027990 [exp] 682 / 0 AT4G02940 535 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10028462 [exp] 116 / 1e-27 AT2G17970 542 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10041917 [exp] 115 / 3e-27 AT2G17970 549 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10028670 [exp] 80 / 1e-16 AT2G17970 249 / 5e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G137700 [exp] 575 / 0 AT4G02940 542 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Potri.008G138900 [exp] 169 / 4e-45 AT1G14710 423 / 6e-140 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.010G102100 [exp] 167 / 1e-44 AT1G14710 421 / 3e-139 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.002G210732 [exp] 125 / 1e-33 AT4G02940 123 / 2e-33 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Potri.005G114800 [exp] 115 / 2e-27 AT2G17970 504 / 1e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.007G012200 [exp] 103 / 3e-23 AT2G17970 458 / 2e-157 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10042669 pacid=23182010 polypeptide=Lus10042669 locus=Lus10042669.g ID=Lus10042669.BGIv1.0 annot-version=v1.0 ATGCCGATTGCCGATCCAGCTCCACCAGTCCAGATGATGATGACTACGTCCGATGCCGCCTTCGCCAAGGACGCAATCCTCTCGTGGTTCCGGGGAGAAT TCGCCGCTGCAAATGCGATCATCGACGCATTGTGCCAACACCTAGCGGAACTCAGCAACAAGGGAGGTTGCAGATCGGATTACGAGCCCGTTTTCTCTGC TATTCATAGGAGGCGGCTCAACTGGATCCCCGTCCTCCGGATGCAGAAGTACCACTCCGTCGCTGACGTGGCAGCAGAGGTCAGGCGAGTCACCGAGAGG AAAGCGCAGGAGAGTAAAGAAGACAATACTAATGCCAATAATAATAATCATCATCAGCCACATCAGGTGGTTGTAAAACAGGAGGAGAATTGTCAAGTGG TGGCGGACTATTGGCCGGACGGCAGTGATCATGGTACCGATTCAGGAGCATCTCAGTCACAGGAAGTGCAGCCAAGTAGTAGTGATGACACCACCACCGT TGATATATGTTCCAACCACCAAGACTGCAATCACCGGCCTACTCTATTCAACCTCACTAAAGGTTTCTCTGCCAAGGAACATGTGAATGTTGTCAAAGGG TTGAAGTTATTCGAACAAGTGTTCACTGATTCCGAGCTGTCCAAGTTGACTCAATTCGTCAATGAGCTCAGACTTGCAGGGCAGAAAGGGGAACTCTCAG GCGACACTTTCATCCTGTTCAACAAGCAGATGAAAGGGAACAAGAGAGAGCTGATTCAGTTTGGCGTCCCGATTTTCGAGCATATTAAAGAAGATGCTAG TAACCAAACTTGTAACATAGAACCAATTCCAGCTCTTCTTGAAGGAGTCATCAATCACCTCGTCCAGTGGCGTCTCGTACCAGAATACAGAAGGCCAAAT GGTTGCATCATCCATTTCTTTGATGAGGAGGAATTTTCGCAACCATTTCAGAAGCCACCCCATGTGGAGCAACCAGTAGCTACCCTTCTCCTTTCCGAAT CAACTATGGCATTCGGACGTAATCTTTCTGGCGACAGCGAAGGCAATTACAGAGGCTCGCTGATGCTCTCATTGAAACAAGGGTCGCTTCTGGTAATGAG GGGCAACAGCACAGATATGGCAAGGCACGTAATGTGTCCTTCCGAAAACAAGAGGGTAAGCATCACATTTTTCCGAGTTCGTGAAGAACCTATCCAAACC CAGTCGCCACCAACCAGTCCAATGAACAGTGGTGCCCTGACTGTTTGGCAGCCAGCGAACCTTCCAAACCTGATCAACAATGGCTATGGTGGAGTGGGAA CAATGGCGAACTGGGGCCATTTAATTCGCAGCCCATTCATCATGGTGGCTGCACCTCCAATGGCTCAGCCTCATTTGATGGTTACTCCGAAAAGAATAAT GCCTCCTCTGGTCCAGAGCGGAGGAGGTACAGGAGTTTTTTTGCCCTGGACTCGAATGGGCAGCAGGAAAACTCCAAAGCACCTTCCACCCCGCGCCCAA AGGGGGCGATACTTGGCATTGCCTTCTGGTCGCCGCACCGTGGATCCTACCTCATCTGAGACGGCCATCACCGTAGGGGCGAAATCGACATGA
AA sequence Show only first row Show all	>Lus10042669 pacid=23182010 polypeptide=Lus10042669 locus=Lus10042669.g ID=Lus10042669.BGIv1.0 annot-version=v1.0 MPIADPAPPVQMMMTTSDAAFAKDAILSWFRGEFAAANAIIDALCQHLAELSNKGGCRSDYEPVFSAIHRRRLNWIPVLRMQKYHSVADVAAEVRRVTER KAQESKEDNTNANNNNHHQPHQVVVKQEENCQVVADYWPDGSDHGTDSGASQSQEVQPSSSDDTTTVDICSNHQDCNHRPTLFNLTKGFSAKEHVNVVKG LKLFEQVFTDSELSKLTQFVNELRLAGQKGELSGDTFILFNKQMKGNKRELIQFGVPIFEHIKEDASNQTCNIEPIPALLEGVINHLVQWRLVPEYRRPN GCIIHFFDEEEFSQPFQKPPHVEQPVATLLLSESTMAFGRNLSGDSEGNYRGSLMLSLKQGSLLVMRGNSTDMARHVMCPSENKRVSITFFRVREEPIQT QSPPTSPMNSGALTVWQPANLPNLINNGYGGVGTMANWGHLIRSPFIMVAAPPMAQPHLMVTPKRIMPPLVQSGGGTGVFLPWTRMGSRKTPKHLPPRAQ RGRYLALPSGRRTVDPTSSETAITVGAKST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10042669 [exp]	0	1
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Lus10035811 [exp]	2.4	0.8388
AT3G57200			unknown protein		Lus10018036 [exp]	3.2	0.7854
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10013839 [exp]	7.5	0.7569
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10036539 [exp]	11.0	0.8060
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10042023 [exp]	13.5	0.7881
AT1G76130		ATAMY2, AMY2	ARABIDOPSIS THALIANA ALPHA-AMY...		Lus10021836 [exp]	14.4	0.8000
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10041041 [exp]	16.7	0.7422
AT5G14210			Leucine-rich repeat protein ki...		Lus10022340 [exp]	17.7	0.7746
AT1G52700			alpha/beta-Hydrolases superfam...		Lus10026054 [exp]	24.4	0.7669
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Lus10026276 [exp]	24.6	0.8044

Compare expression of checked genes

Lus10042669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.