Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03350 235 / 6e-72 BSD domain-containing protein (.1) AT4G13110 164 / 1e-46 BSD domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029636 [exp] 584 / 0 AT1G03350 302 / 1e-97 BSD domain-containing protein (.1) Lus10012761 [exp] 166 / 6e-46 AT1G03350 241 / 1e-76 BSD domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G199000 [exp] 195 / 3e-57 AT4G13110 179 / 4e-53 BSD domain-containing protein (.1) Potri.008G199100 [exp] 184 / 4e-52 AT4G13110 215 / 8e-66 BSD domain-containing protein (.1) Potri.010G028801 [exp] 173 / 2e-48 AT1G03350 211 / 1e-62 BSD domain-containing protein (.1) Potri.015G050700 [exp] 125 / 3e-34 AT1G03350 116 / 1e-31 BSD domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03909 [flax] [poplar] BSD BSD domain
Representative CDS sequence Show only first row Show all	>Lus10042670 pacid=23181979 polypeptide=Lus10042670 locus=Lus10042670.g ID=Lus10042670.BGIv1.0 annot-version=v1.0 ATGGATTTCTTCAGATCAGTCTTTGCCGACGAACCAGACCCCCCTCCCAAGTCCACGCCCGACTCCCCATCCTCTCCAGATCAAGAACATCAAGAGCAAT CAATCTCCGATCCGGACTCCGATTCTCCACCAAAGCAACAATCCCCAAAGCCTAGCTCCGAGGTCAGCGCCATCGGCGGAGGCGGTGGTTGGAGTAGCTT CGGCGGCCTGATCAAAACACTTACCACCAAATCCGAATCCGTGATCGAGACCTACCGCCGCGATCTGAAAGAATTCAGCACTGGCTTGCGCAAGGAGATC GAGGTCGCTCAGGGATCGTTGGAGCACGTCGGCCAGGCCATCGACGAGATCGGTAGTTCCGTAATTAAGAACACCACGGAGATCATTTCGCACGGCAAGG AAGCGTTGTTGGCTCTCGAGCAAGAAGAATCTGATTCCTCCGACAGCAACATCGAGAGAGTAGGAGGCAGCACCAATAGCTTGAGGTACAGCCGATTCGA CGCTCAGGTTAGGGTTATCCAGGGGGACACCAGCACTTACTGCGAGGAGCCAGATGATTTGGAGGATTTTGGTAAGTGGAAATCGTCTCAGTTTGTGATT GAAGAGTGTAGGGATGAGATCACGAGTTTGCTGGAAGGGAATGGTATTATGGATGCCATATATAGAAAAGTGGTTCCAGGAATTGTCGATGAAGAAACGT TCTGGTCTAGATATTACTATAGGATTTATAAGCTCAAGCAAGCTGAGGCTTTGAGAGCTAATCTCGTGAAGCGAGCTATCTCTGCTGAGGAGGAAGATTT GAGTTGGGATGTTGATGATGAAGATGAGGAAGATGAGGAAGAAGAGGAAGAAAGGAAGGGTAAAGAGAATGAAGTGAAAGAGGAGGTGAAGGTTAATGTG GAGGAGAATATGGTGGTGAAGAGCAGAGATTTAATGGAAGTTGGGAAATTGGATGGAACTAGTGAGGTGGAGAAGAATCCTGTTGAGGATAAGAAAATGG CAGAAGGGAAGTCTGAGGAAACTGTGAATGTCAAGGAGGAACCTGCTGCTGCTACTGCAACAGTTAAGGAGAAGGCAAATGATGCTACTGCTAGTGGTAG TGAATCTAAGGAGAAAGTAGATGAAAGCATCAAAGAAGCAACTGCAGCAGCAAAATCCGCTGAGAATTCTGGCTCAGAAGGGAATGGTGGCAATGGGGGA TCATGTAAAGACAGTGATTACTCAGTAGTGTCGAGCCATCAGACGACAGGAGAGGAGGAAGATCTAGGGTGGGACGAGATTGAAGATCTAAGCAGCATCG ACGATAGTAAGAAAGAGGAGATGAGAGTGAGCCAGAGTGGGAGTGCTGCTGCAAACAAGGAGGAATTGAGGAGGAGACTGAGTGTTGCAGAGGAAGAGGA GGAGGATTTGAGTTGGGATATTGAAGATGACGACGACCCGGTTAAACCTTGA
AA sequence Show only first row Show all	>Lus10042670 pacid=23181979 polypeptide=Lus10042670 locus=Lus10042670.g ID=Lus10042670.BGIv1.0 annot-version=v1.0 MDFFRSVFADEPDPPPKSTPDSPSSPDQEHQEQSISDPDSDSPPKQQSPKPSSEVSAIGGGGGWSSFGGLIKTLTTKSESVIETYRRDLKEFSTGLRKEI EVAQGSLEHVGQAIDEIGSSVIKNTTEIISHGKEALLALEQEESDSSDSNIERVGGSTNSLRYSRFDAQVRVIQGDTSTYCEEPDDLEDFGKWKSSQFVI EECRDEITSLLEGNGIMDAIYRKVVPGIVDEETFWSRYYYRIYKLKQAEALRANLVKRAISAEEEDLSWDVDDEDEEDEEEEEERKGKENEVKEEVKVNV EENMVVKSRDLMEVGKLDGTSEVEKNPVEDKKMAEGKSEETVNVKEEPAAATATVKEKANDATASGSESKEKVDESIKEATAAAKSAENSGSEGNGGNGG SCKDSDYSVVSSHQTTGEEEDLGWDEIEDLSSIDDSKKEEMRVSQSGSAAANKEELRRRLSVAEEEEEDLSWDIEDDDDPVKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03350			BSD domain-containing protein ...		Lus10042670 [exp]	0	1
AT3G08780			unknown protein		Lus10022677 [exp]	2.0	0.8974
					Lus10032068 [exp]	2.0	0.8903
AT3G06780			glycine-rich protein (.1)		Lus10037706 [exp]	2.4	0.8976
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10015668 [exp]	3.5	0.8866
AT1G71780			unknown protein		Lus10016547 [exp]	4.5	0.8900
					Lus10010972 [exp]	4.6	0.8918
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Lus10029188 [exp]	4.9	0.8748
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015807 [exp]	5.7	0.8690
AT1G07310			Calcium-dependent lipid-bindin...		Lus10005867 [exp]	6.2	0.8642
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10006432 [exp]	6.3	0.8696

Compare expression of checked genes

Lus10042670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.