Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000293 [exp] 292 / 5e-96 ND 48 / 2e-05 Lus10036312 [exp] 295 / 2e-95 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10001304 [exp] 153 / 2e-42 AT5G08020 40 / 0.006 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10006887 [exp] 133 / 9e-35 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1) Lus10034056 [exp] 131 / 2e-34 AT4G19130 47 / 4e-05 Replication factor-A protein 1-related (.1) Lus10003025 [exp] 122 / 2e-31 AT5G61000 57 / 2e-08 Replication factor-A protein 1-related (.1) Lus10008178 [exp] 110 / 5e-28 ND / Lus10029487 [exp] 96 / 2e-22 ND / Lus10042979 [exp] 97 / 3e-22 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042671 pacid=23181938 polypeptide=Lus10042671 locus=Lus10042671.g ID=Lus10042671.BGIv1.0 annot-version=v1.0 ATGACACTATGCCGTAACATCCTCATATCATCTAAGCCTTACATCCTCTCTATAGTTTTTGGCCTCCGCCCTCAAAGGAAGGACTATCGAACAAGTCCAT TTCCTCATTGTTTGGACTTGACACTGACTACCCAATTCCATCTTCAGCCGCCGACCACGCCTCCATTCCCTACTGAATCGTTGCACTATATTGAATTTGA GGCTCTGTCTGGTCGGCTTCACCCCCCTTATCCATACCTCACAGACCCTGTAGGGAAGGTTGTCGTTGCTGGCGAGCCATATCATTTTCAACGTGGTCAT GCAATGGGTCGCCTTCAAGAACTGATGGTGGTTAATGAGAGAGGATTTGAAGTTATCGTTTCCCTCTTTGGTGACCTCACAAAAATTGTTGATGCACAAA TGGTGTTGAGGCTGCCGATTCAAATCCGACCATTTTACGTGGTACCTCCGGTTCCAGTTTCCTATGTTCCGCCAAAGTTCGCCACTCCGGAAAAGTTACA TAGCCATATTCGTGATTCATGTCAGACAATTCGTGAACTTGTGGACCTTTACTCCGCTGGTGGAGATTCGGATCCACACTATCGGTGTGATGCAATGATC AAGGGGTTTGATACTAACACACCATGGTCATACGTCGCATGCCCTCATTGCTTCAAGGCCGTTGCTCCTACCATACCAATTTCTGGTGCTCAGTCCATGA AACGATTCTTGCTGCAGATGTTCAGTACAAATTCAACTGATGAGGCATTGTTCGTTTTGCTTGGTATGTATGCTAAAAGAATTCTCCCCATCCCCACTGC TGAGTTGATCCGTGCATATCCTAATGATCTCGACCAATTCCCACAAGCAATTGCATTCTTAGTAGGATAA
AA sequence Show only first row Show all	>Lus10042671 pacid=23181938 polypeptide=Lus10042671 locus=Lus10042671.g ID=Lus10042671.BGIv1.0 annot-version=v1.0 MTLCRNILISSKPYILSIVFGLRPQRKDYRTSPFPHCLDLTLTTQFHLQPPTTPPFPTESLHYIEFEALSGRLHPPYPYLTDPVGKVVVAGEPYHFQRGH AMGRLQELMVVNERGFEVIVSLFGDLTKIVDAQMVLRLPIQIRPFYVVPPVPVSYVPPKFATPEKLHSHIRDSCQTIRELVDLYSAGGDSDPHYRCDAMI KGFDTNTPWSYVACPHCFKAVAPTIPISGAQSMKRFLLQMFSTNSTDEALFVLLGMYAKRILPIPTAELIRAYPNDLDQFPQAIAFLVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10042671 [exp]	0	1
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Lus10011905 [exp]	1.4	0.7487
AT2G26550		HO2	heme oxygenase 2 (.1.2.3)		Lus10042666 [exp]	3.5	0.7334
AT3G17740			unknown protein		Lus10031899 [exp]	3.9	0.7721
					Lus10002802 [exp]	11.2	0.6519
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	16.0	0.7387
AT3G06790			plastid developmental protein ...		Lus10037488 [exp]	17.8	0.7061
AT5G19020		MEF18	mitochondrial editing factor ...		Lus10019079 [exp]	18.0	0.6675
AT1G60990			Glycine cleavage T-protein fam...		Lus10020818 [exp]	26.3	0.6895
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10000295 [exp]	27.5	0.6397
AT3G14470			NB-ARC domain-containing disea...		Lus10022351 [exp]	28.2	0.7096

Compare expression of checked genes

Lus10042671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.