Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02980 259 / 1e-86 ABP1 endoplasmic reticulum auxin binding protein 1 (.1) AT2G48070 142 / 7e-41 RPH1 resistance to phytophthora 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029633 [exp] 327 / 2e-113 AT4G02980 273 / 2e-94 endoplasmic reticulum auxin binding protein 1 (.1) Lus10029632 [exp] 307 / 9e-105 AT2G48070 248 / 1e-83 resistance to phytophthora 1 (.1.2.3) Lus10027985 [exp] 295 / 5e-101 AT4G02980 269 / 8e-93 endoplasmic reticulum auxin binding protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G212400 [exp] 290 / 4e-99 AT4G02980 276 / 8e-96 endoplasmic reticulum auxin binding protein 1 (.1) Potri.014G137300 [exp] 155 / 1e-45 AT2G48070 233 / 4e-78 resistance to phytophthora 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02041 [flax] [poplar] Auxin_BP Auxin binding protein
Representative CDS sequence Show only first row Show all	>Lus10042673 pacid=23181748 polypeptide=Lus10042673 locus=Lus10042673.g ID=Lus10042673.BGIv1.0 annot-version=v1.0 ATGCAGTCGCCGATCTCCACTTCTCTCTGCCACCCTATCCACCACCCTTTGACATGGACGTCGTCGGGAATCAGAAAATTCCGTCCACAACTCCATTTCC AATTAGGCATAAGCAGAAGAGCTCTTCGGATACGCCCCAACGCAACCGACGAAATTAACACGCAGCAGCAGCCGCCGCCGCCGATTGAGCTGGAGAATAA GAAGAAAGAAGTTGGAATGAAAGCAGACGAAGCAGTGGGAGCAGTGACTTCAACATCCGTACAATCCCCGGTAGCTATCGACGGTAAAGAGCTGAAAAAG GCCGTACAGAAGACGGCGGCAACATTTGCGCCAAGGGCGTCGACCGCGAGTAAGAATCCGGCGGTTCCAGGGACGACGCTGTACAGCGTGTTCGAGATTC AAGCGTATGCGTCGATGCTGATTGGTGGAGCTCTTTCTTTCAATCTGATATTCCCTTCCGATGGGCCTGATCTTTGGAGATTGATGGGGATGTGGTCAAT CTGGATGTTCAGGTTTCCACTTGTACGAAATATCAGTGAGCTCCCGCAAGATAACTATGGAAGGGCTGGTTTCTCCCATACAACAGTAGCAGGTTCTGTC CTGCATGGGATGAAAGAGGTTGAAGTATGGCTTCAAACATTTTCTCCAGGCTCAAAGACTCCAATCCACAGACACTCGTGTGAAGAAGTATTTGTTGTGC TTAAAGGAAGTGGGAAACTCTATATGGCTTCTGACTCGCACCACAAGCATCCAGGCAAACGGGAAGAACATTTCATCTTTCCCAATAGCACATTCCACAT CCCAGTGAATGATGCACACCAGGTGTGGAATACAGACGAACACGAGGATTTGCAAGTACTTGCCATTATATCTCGACCACCAGTGAAAGTGTTCATATAC GAAGACTGGTCGATGCCACACACAGCAGCAAAGCTGAAGTTCCCGTACTATTGGGACGAAGAATGCCTGGAAACACCAGCAAAAGATGAGCTGTAG
AA sequence Show only first row Show all	>Lus10042673 pacid=23181748 polypeptide=Lus10042673 locus=Lus10042673.g ID=Lus10042673.BGIv1.0 annot-version=v1.0 MQSPISTSLCHPIHHPLTWTSSGIRKFRPQLHFQLGISRRALRIRPNATDEINTQQQPPPPIELENKKKEVGMKADEAVGAVTSTSVQSPVAIDGKELKK AVQKTAATFAPRASTASKNPAVPGTTLYSVFEIQAYASMLIGGALSFNLIFPSDGPDLWRLMGMWSIWMFRFPLVRNISELPQDNYGRAGFSHTTVAGSV LHGMKEVEVWLQTFSPGSKTPIHRHSCEEVFVVLKGSGKLYMASDSHHKHPGKREEHFIFPNSTFHIPVNDAHQVWNTDEHEDLQVLAIISRPPVKVFIY EDWSMPHTAAKLKFPYYWDEECLETPAKDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10042673 [exp]	0	1
AT2G48070		RPH1	resistance to phytophthora 1 (...		Lus10029632 [exp]	1.0	0.9326
AT1G26220			Acyl-CoA N-acyltransferases (N...		Lus10029099 [exp]	2.8	0.9084
AT3G04550			unknown protein		Lus10042554 [exp]	3.7	0.8781
AT3G48200			unknown protein		Lus10039976 [exp]	5.3	0.8879
AT1G26220			Acyl-CoA N-acyltransferases (N...		Lus10013061 [exp]	11.0	0.8776
AT3G12345			unknown protein		Lus10040344 [exp]	11.7	0.9029
AT1G03600		PSB27	photosystem II family protein ...		Lus10037438 [exp]	13.2	0.8813
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10036446 [exp]	17.9	0.8713
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10013435 [exp]	21.0	0.8746
AT3G60750			Transketolase (.1.2)		Lus10031708 [exp]	22.0	0.8816

Compare expression of checked genes

Lus10042673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.