Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63030 208 / 2e-69 MBD4 methyl-CPG-binding domain 4 (.1) AT4G22745 195 / 4e-64 MBD1 methyl-CPG-binding domain 1 (.1) AT5G35330 112 / 7e-31 MBD2, MBD02, ATMBD2 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) AT4G00416 100 / 1e-27 MBD3 methyl-CPG-binding domain 3 (.1) AT5G35338 78 / 9e-19 MBD12 methyl-CPG-binding domain 12 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029631 [exp] 334 / 1e-119 AT3G63030 208 / 1e-69 methyl-CPG-binding domain 4 (.1) Lus10008176 [exp] 256 / 5e-88 AT3G63030 204 / 3e-67 methyl-CPG-binding domain 4 (.1) Lus10027980 [exp] 253 / 4e-87 AT3G63030 206 / 4e-68 methyl-CPG-binding domain 4 (.1) Lus10021593 [exp] 120 / 2e-33 AT5G35330 283 / 1e-94 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) Lus10017146 [exp] 120 / 3e-33 AT5G35330 283 / 5e-95 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G137100 [exp] 238 / 1e-81 AT3G63030 223 / 4e-75 methyl-CPG-binding domain 4 (.1) Potri.002G212600 [exp] 234 / 1e-79 AT3G63030 221 / 3e-74 methyl-CPG-binding domain 4 (.1) Potri.018G145500 [exp] 113 / 1e-30 AT5G35330 282 / 2e-94 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) Potri.006G077600 [exp] 112 / 2e-30 AT5G35330 257 / 6e-85 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) Potri.018G146700 [exp] 112 / 5e-30 AT5G35330 286 / 6e-96 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07496 [flax] [poplar] zf-CW CW-type Zinc Finger CL0081 [flax] [poplar] MBD-like PF01429 [flax] [poplar] MBD Methyl-CpG binding domain
Representative CDS sequence Show only first row Show all	>Lus10042674 pacid=23181813 polypeptide=Lus10042674 locus=Lus10042674.g ID=Lus10042674.BGIv1.0 annot-version=v1.0 ATGGTTCGTGTAATCGATACATATACAGCACAATGCCATACTTGCCTGAAATGGAGAGTGATTCCAACTGAAGAAGAGTACGAGGAAATCAGAAGCAAGA GTATCGCTGACAAATTTACCTGCAAGTCCAAAGGCCAGTCCTGCGACGATCCTGCTGATATAGAGTACAATGCATCTCGGACCTGGGTCATAGACAAACC CGGAGTTCCGAAAACCCCCAAGGGTTTCAAAAGGCACCTGGTTCTCAGACGAGACTTCTCCAAAATGGATGCTTACTATATAACTCCAACTGGGAAGAAA CTCCGGACGAGAAACGAAATCTCATCTTTCATAGCGTCCAAACCGGAGTACAAACATGTCAAAGTCGACGACTTCAACTTCACAACTCCCAAGGTCATGG AAGACACCATCCCGGAGGAAGTCTTGGAAAAGTCTGCTCCCGGTGGCAACAGCAGCAAGAGAAGCAAGGTGGGTAAGCAAGAAGCTTGA
AA sequence Show only first row Show all	>Lus10042674 pacid=23181813 polypeptide=Lus10042674 locus=Lus10042674.g ID=Lus10042674.BGIv1.0 annot-version=v1.0 MVRVIDTYTAQCHTCLKWRVIPTEEEYEEIRSKSIADKFTCKSKGQSCDDPADIEYNASRTWVIDKPGVPKTPKGFKRHLVLRRDFSKMDAYYITPTGKK LRTRNEISSFIASKPEYKHVKVDDFNFTTPKVMEDTIPEEVLEKSAPGGNSSKRSKVGKQEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10042674 [exp]	0	1
AT4G08240			unknown protein		Lus10009881 [exp]	1.4	0.9369
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10012170 [exp]	3.0	0.9325
AT3G07440			unknown protein		Lus10020404 [exp]	4.7	0.9358
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10031006 [exp]	6.9	0.9237
AT3G22320		RPB5A, NRPD5, N...	RNA POLYMERASE II FIFTH LARGES...		Lus10013639 [exp]	8.0	0.8938
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10036509 [exp]	9.9	0.9205
AT3G52220			unknown protein		Lus10038762 [exp]	11.3	0.9312
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10009916 [exp]	12.7	0.9216
					Lus10039025 [exp]	12.7	0.9141
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10029086 [exp]	13.6	0.8882

Compare expression of checked genes

Lus10042674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.