Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48030 478 / 5e-167 DNAse I-like superfamily protein (.1) AT3G21530 403 / 2e-137 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029630 [exp] 776 / 0 AT2G48030 484 / 2e-169 DNAse I-like superfamily protein (.1) Lus10008177 [exp] 563 / 0 AT2G48030 486 / 5e-170 DNAse I-like superfamily protein (.1) Lus10027979 [exp] 556 / 0 AT2G48030 479 / 3e-167 DNAse I-like superfamily protein (.1) Lus10012772 [exp] 422 / 8e-145 AT3G21530 504 / 2e-177 DNAse I-like superfamily protein (.1) Lus10034003 [exp] 418 / 2e-142 AT3G21530 504 / 2e-176 DNAse I-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136900 [exp] 539 / 0 AT2G48030 516 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G198100 [exp] 437 / 3e-150 AT3G21530 506 / 1e-177 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10042675 pacid=23181918 polypeptide=Lus10042675 locus=Lus10042675.g ID=Lus10042675.BGIv1.0 annot-version=v1.0 ATGTTCAGAGTACTGAACAAGAGGCTCCGCCTCCTCTGTTCCCGTCTCCGGTGGCGCCACAACCTCCTACGGTCCTCCGACATTCAGATTCATAAGAAGC TAGGGAAACCCGGTTCCAAGTTAGGGAACGAATCTTCCACGGTTCACCCGAACAACCATCTGGGTAAACCGGAAACAGAGGAGGAACGAGTCAAACCGGT GAAGGTCGCGACTTTCAATGCTGCTCTGTTTTCCATGGCTCCGGCAGTTCCTCCTCAGCCGGGAAATTCTTCCATTTCCAGCCTTGACTTGGGTTTCGGA AGGAGCAAGAGTTCGATCGACTACGTAACGAGAACTAACTCAGCTAACGACCGCCCGATTAAGGGCATACTGAAGCCGTCGCCGTCGCTGCTGCATCCCA ACTCCGTTATTAGCGGCGGCGAGGAGGATGATTATTCAGTTCAGCAGCAGAAATTTGCTAGGTCGAGGTTGAGGGTTTCGATCAACCTTCCCGACAACGA GATTTCGATCAGGCAGCAGAGTTTCCGAGAAGGCGGCGAGGAAAACTGCAGCGGCGGCGGAGGAGTTGCAAGGGCTTGGAAAGCGGCGGCGAGCAGGTCG AAGAGTTTGGTTTATTCGGAAATGGGGAAAAGGTCGGTGGTGGAGGTGCTAAAGGAGCTGGATGCTGATATTTTGGCACTGCAGGAAGTGAAAGCAGAGG AAGCGAAGGAGATGAAGCCATTGTCGGATTTAGCTGCTGCTCTAGGGATGTATTACGTTTTTGCAGAGAGCTGGGCGCCTGAATACGGCAACGCTATACT CTCCAAATGGCCCATCAAGCAATGGAATGTTCAGAAGATCTTCGATGATTCTGATTTCAGGAATGTGTTGAAGGCAACTATCAACGTGCCTAACATTGGG GAGGTAAACTTCCACTGCACCCACTTGGATCACCTTGACGAGAAGTGGAGAATGAAGCAAGTGAATGCGATCATGCAGTCGAGCGAAGGCCCCCATCTCT TAGCTGGAGAGCTCAATTCGCTCGACGAAACTGACTACTCTGAAGAGAGGTGGATCGACATTGTCAAGTACTATGAGGAGATGGGAAAGCCAACGCCAAA GGCGGAAGTAATGAGGTTTCTGAAGAGCAAGCATTATACAGATGCTAAGGATTTTGCTGGGGAATGTGAGTCTGTGGTCATGATAGCCAAAGGACAAAAT GTTCAAGGGACTTGTAAATACGGGACTCGGGTGGACTACATCATTTCATCCTCGAATTCTCCCTACAAGTTTGTTCCAGGATCGTATTCAGTTCTGTCTT CGAAAGGGACATCCGATCATCACATTGTGAAGGTTGATATTGTCAGAATAGATAGCAGTAGTAAAGATAGTCATAGTTACAGTGAATCAGCAGCAAAGAA AAGTCTAAAACATCCATATAGATAA
AA sequence Show only first row Show all	>Lus10042675 pacid=23181918 polypeptide=Lus10042675 locus=Lus10042675.g ID=Lus10042675.BGIv1.0 annot-version=v1.0 MFRVLNKRLRLLCSRLRWRHNLLRSSDIQIHKKLGKPGSKLGNESSTVHPNNHLGKPETEEERVKPVKVATFNAALFSMAPAVPPQPGNSSISSLDLGFG RSKSSIDYVTRTNSANDRPIKGILKPSPSLLHPNSVISGGEEDDYSVQQQKFARSRLRVSINLPDNEISIRQQSFREGGEENCSGGGGVARAWKAAASRS KSLVYSEMGKRSVVEVLKELDADILALQEVKAEEAKEMKPLSDLAAALGMYYVFAESWAPEYGNAILSKWPIKQWNVQKIFDDSDFRNVLKATINVPNIG EVNFHCTHLDHLDEKWRMKQVNAIMQSSEGPHLLAGELNSLDETDYSEERWIDIVKYYEEMGKPTPKAEVMRFLKSKHYTDAKDFAGECESVVMIAKGQN VQGTCKYGTRVDYIISSSNSPYKFVPGSYSVLSSKGTSDHHIVKVDIVRIDSSSKDSHSYSESAAKKSLKHPYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48030			DNAse I-like superfamily prote...		Lus10042675 [exp]	0	1
AT5G49760			Leucine-rich repeat protein ki...		Lus10007587 [exp]	4.6	0.9223
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10018030 [exp]	9.6	0.8968
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10023829 [exp]	10.5	0.8904
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021102 [exp]	17.4	0.9005
AT3G21690			MATE efflux family protein (.1...		Lus10001142 [exp]	19.2	0.8661
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10036296 [exp]	21.9	0.8964
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10003183 [exp]	23.2	0.8889
AT5G53110			RING/U-box superfamily protein...		Lus10012628 [exp]	23.7	0.8651
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10009386 [exp]	25.7	0.8659
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10000711 [exp]	27.4	0.8876

Compare expression of checked genes

Lus10042675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.