Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48020 577 / 0 Major facilitator superfamily protein (.1.2) AT5G18840 514 / 0 Major facilitator superfamily protein (.1) AT3G05150 483 / 8e-169 Major facilitator superfamily protein (.1) AT1G54730 429 / 9e-148 Major facilitator superfamily protein (.1.2.3) AT1G08930 374 / 1e-125 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT5G27350 364 / 4e-122 SFP1 Major facilitator superfamily protein (.1) AT1G08920 359 / 3e-120 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT3G05160 350 / 7e-117 Major facilitator superfamily protein (.1.2) AT1G08890 349 / 3e-116 Major facilitator superfamily protein (.1) AT3G05165 348 / 4e-116 Major facilitator superfamily protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029629 [exp] 782 / 0 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008184 [exp] 648 / 0 AT2G48020 593 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008183 [exp] 625 / 0 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008179 [exp] 592 / 0 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027975 [exp] 591 / 0 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008182 [exp] 587 / 0 AT2G48020 613 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027976 [exp] 559 / 0 AT2G48020 598 / 0.0 Major facilitator superfamily protein (.1.2) Lus10012780 [exp] 510 / 6e-179 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10035354 [exp] 436 / 4e-150 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G212900 [exp] 605 / 0 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 568 / 0 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 510 / 3e-179 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 444 / 3e-153 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 381 / 1e-128 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 365 / 2e-122 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G037000 [exp] 365 / 4e-122 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027800 [exp] 355 / 1e-118 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.005G040000 [exp] 351 / 5e-117 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.007G024300 [exp] 350 / 2e-116 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10042676 pacid=23182050 polypeptide=Lus10042676 locus=Lus10042676.g ID=Lus10042676.BGIv1.0 annot-version=v1.0 ATGAGGGAGCCGCTCATTCGAAACAACTTAGCATCATCGGACCAGGGCGATCATGGCTCGAGGCCGGAGGAGCACAAGGAGGATGATCACAGCCTCTGGA TGGTTTACCTCAGCACTTTTGTTGCTGTTTGTGGCTCTTACGAATTCGGATGCTGCGTGGGATTTTCGTCGCCTACACAAGATGCTATCAGGGAAGATCT GTCACTGTCTCTCTCCCAGTATTCGGTATTTGGTTCGATTTTGACGTTCGGGGCGATGTTCGGTGCAGTACTTAGCGGAAAGTTAGCTGATCTCTTTGGC CGTAAAGGGGCTATGAGATTGTCCAGTGCCTTCTGTGTTGTTGGTTGGCTTGCCATATATTTTGCTCAGGGGGCAATGGCATTGGACATTGGTAGATGGG CAACTGGCTTTGGAATGGGAGTGTTCTCCTACGTGGTTCCTGTTTTCATATCCGAAATTGCTCCCAAGAATCTTCGAGGAGCTCTGGCTACCTTGAACCA GGTTATGATCTGTGCTGGAGTGTCTGCATCGTTCATCGTAGGCACATTCATAACGTGGAGGACTCTTGCCTTATCCGGGCTGGTTCCTTGTGCGGTCCTG CTTTTCGGGTTAACTCTCATCCCGGAATCTCCCAGATGGCTGGCTAAGGCAGGACACGAGAAGGAATTCGAGGTAGCCTTGCAGAAGCTGCGAGGCAAGG ATGCAAACATAGCAAGGGAGGCAGCTGAAATCCAGGTAGGAGTTGGGTTGATGGTGGTTCAACAATTTGGAGGAATAAATGCAGTGTGCTTTTACGCCAG CAACATTTTGAAGTCAGCAGATAGCCGATGGAGGTTTGATCCTGATGAAGTTGGTTTGGAATGTTCATTTGTCTCAGGATTCTCCTCCAGTCTTGGAACG ATTATCTATGCCATTGTTCAGATGATAGTGACAGTCCTAATTACACAAGTGGTAGACAGAGCTGGAAGGAAGCCTCTTTTACTGGTTTCGGCATTCGGGT TGGTGGTTTCCTGCTTGCTAATAAGCGTTTCATTCTATCTCAAGACCCATCAGTTGGCCATTGACTCTGTTTCACTGCTGGCTGTATCTGGCATACTGTT GTATGTTGCATCGTTTTCGGCTGGGATGGGTGCAGTCCCGTGGGTCATCATGTCAGAGATATTCCCAATAAACATAAAGGGGGTAGCTGGAGGTTTGGCA ACACTGGTGAACTGGTTTGGCGCTTGGGCAGTTTCATACACATTCAACTTCCTCTATTCCTGGAGTTCCTACGGTACGTTTCTTGTGTATGCTGCAGTGA ACGTAGTAGGAATAGTGTTTGTGGTGAAGGTGGTACCAGAAACCAAAGGCAGAACCTTAGAACAGATTCAAGCAGCCATTAATTAA
AA sequence Show only first row Show all	>Lus10042676 pacid=23182050 polypeptide=Lus10042676 locus=Lus10042676.g ID=Lus10042676.BGIv1.0 annot-version=v1.0 MREPLIRNNLASSDQGDHGSRPEEHKEDDHSLWMVYLSTFVAVCGSYEFGCCVGFSSPTQDAIREDLSLSLSQYSVFGSILTFGAMFGAVLSGKLADLFG RKGAMRLSSAFCVVGWLAIYFAQGAMALDIGRWATGFGMGVFSYVVPVFISEIAPKNLRGALATLNQVMICAGVSASFIVGTFITWRTLALSGLVPCAVL LFGLTLIPESPRWLAKAGHEKEFEVALQKLRGKDANIAREAAEIQVGVGLMVVQQFGGINAVCFYASNILKSADSRWRFDPDEVGLECSFVSGFSSSLGT IIYAIVQMIVTVLITQVVDRAGRKPLLLVSAFGLVVSCLLISVSFYLKTHQLAIDSVSLLAVSGILLYVASFSAGMGAVPWVIMSEIFPINIKGVAGGLA TLVNWFGAWAVSYTFNFLYSWSSYGTFLVYAAVNVVGIVFVVKVVPETKGRTLEQIQAAIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48020			Major facilitator superfamily ...		Lus10042676 [exp]	0	1
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10024360 [exp]	2.2	0.8145
AT5G12390		FIS1B	FISSION 1B, Tetratricopeptide ...		Lus10009707 [exp]	2.4	0.7630
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10040424 [exp]	3.5	0.7492
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10028845 [exp]	6.3	0.7139
					Lus10010248 [exp]	7.0	0.7240
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001042 [exp]	9.4	0.7222
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10026749 [exp]	9.9	0.7498
AT1G50560		CYP705A25	"cytochrome P450, family 705, ...		Lus10015706 [exp]	10.1	0.6903
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001041 [exp]	15.5	0.7330
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10036458 [exp]	16.7	0.6337

Compare expression of checked genes

Lus10042676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.