Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48010 734 / 0 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G11050 347 / 2e-110 Protein kinase superfamily protein (.1) AT5G18500 259 / 1e-78 Protein kinase superfamily protein (.1.2) AT3G59110 253 / 3e-76 Protein kinase superfamily protein (.1) AT1G09440 252 / 3e-76 Protein kinase superfamily protein (.1) AT1G56720 251 / 2e-75 Protein kinase superfamily protein (.1.2.3) AT3G09010 244 / 4e-74 Protein kinase superfamily protein (.1) AT2G42960 246 / 1e-73 Protein kinase superfamily protein (.1) AT3G26940 244 / 1e-73 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT3G24540 245 / 4e-73 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029626 [exp] 981 / 0 AT2G48010 672 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10042679 [exp] 757 / 0 AT2G48010 678 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008186 [exp] 750 / 0 AT2G48010 647 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027971 [exp] 740 / 0 AT2G48010 646 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008187 [exp] 706 / 0 AT2G48010 660 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027970 [exp] 684 / 0 AT2G48010 653 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027972 [exp] 645 / 0 AT2G48010 601 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10001295 [exp] 338 / 2e-106 AT1G11050 770 / 0.0 Protein kinase superfamily protein (.1) Lus10028549 [exp] 323 / 6e-105 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136466 [exp] 808 / 0 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136400 [exp] 805 / 0 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.005G040200 [exp] 600 / 0 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 504 / 1e-172 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.004G084900 [exp] 377 / 2e-121 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132800 [exp] 373 / 3e-120 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 368 / 2e-118 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.005G181800 [exp] 344 / 2e-109 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 262 / 3e-81 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.010G001600 [exp] 265 / 4e-81 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042678 pacid=23181878 polypeptide=Lus10042678 locus=Lus10042678.g ID=Lus10042678.BGIv1.0 annot-version=v1.0 ATGAAATCTCCCCCCCAAGTCAAGATTCCGCAGCCGTCTCGGCAACAACTACTACTACTCCTCCTCCTCCTCCTCCCATTTCCCGATGTCCTCAATCCTT CTATCATCTCCACCGCCGCAGCCGCCTCCATGTCCGTCCGCCTCCTCCTCCTCCTCCTCGCCGCATTCCTAACCACCTCCGCCGCCCAAAACTCCACCTG CCCGCTCGACTTCACAGTCCTCCAACGCCTCTACGACGGCACCAACCCTCCCGAAATCGACCCCTCTCAGAACTGCCAGTACATCCGCCAAGGTCTCCGC CTCGTTCAGTCCGAATATCTCCTCCGCACCAACAACTTCCTCCCGCCCCTCGCCACCGCCGACTCCTGCTGGCGAGCCTACCAGCGACTGGTCAACGACT CCCTCCCTAACTTCGACATCCGATCCTCTTGCGGCTTCCAAACCTCTTGGATCTCTCAGGGATGTATGAACATCACCACCAGACAGCAATTCGAAACCTT AGTTACCAATTCTTCCCTCTCCGACGTCGTATCCAGCTGCGACCAGCCTCTCGAGAACAATTCTCCTTGCGCCGCTTGTACCGCCAGCTTGTCCAGAGTC CAGGCCTTGCACCTCACGGGGAACTCCGTCGGAAATGTTTCCGATTGCCAAGCCTATCCGTCGATCTACGCTGCTGCGTTCGTCAATCCCTTAGGCCCCA CTGATAAAGGTACTGCTAAGTGCTTGTTTCTGCTTGATTTCGGTTCTAGTAAAACCACTAGTAAGAACAAGAACAAGAAGAAGACGTTAGTGGTTGTGGG TGTTTGTGTTGGATTGATTGTTGCATTCTTTATTGTAAGTGGCGGATTATGGTTCTGGAGGGGGAAGTATGGGATGACGAAGAGGAAGAGAAGGAAGTTG AACAGATTAGGGATTGATAATAATAATCCTTTGGGGAAATCCACTAGTTTGGAGAGCATTACCGAGAGCACGACTCTGGTGAAGTTTAAATTCGACGAGA TCAAGAAAGCAACCAGGAATTTCGCCAGGGATCACATCATCGGTAGAGGAGGGTATGGAAATGTATACAAAGGCAGGTTAATGGACGGATCCGAGGTTGC GGTGAAGAGGTTTAAGAACTGTTCAGCTGCCGGAGATGCAAGCTTTGCACACGAAGTCGAGGTGATTGCCAGCGTAAGGCACGTAAATCTCGTGGCATTG AGAGGCTACTGCATCGCCACTACTTCCATGGAAGGTCATCAGAGGATAATCGTTTGCGAATTGATGAAGAACGGTAGCCTGCACGATCACCTGCTGGCCG GTAACGAAAATGGGAAACTCACCTGGCCGGCTCGGCAGAAGATTGCATTGGGGACGGCGAAAGGATTGGCTTACTTGCACTACGGGGCACAACCGGGAAT CATTCACCGAGACATCAAGGCGAACAATATCCTGCTGGACGACAATTTCGAAGCTAAAGTCGCAGACTTTGGGCTGGCGAAGTTCAACCCGGAAGGAATG ACGCATTTAAGCACCAGGGTGGCTGGGACGATGGGGTATGTGGCGCCGGAGTATGCCCTGTACGGGCAACTGACGGAGAGAAGCGATGTTTATAGTTATG GGGTGGTGTTGCTAGAGCTCCTGAGCGGGAAGAAAGCACTGTTTAAACCTGATGGTGGTGAAGATGATGCAGCCCAGCCATGTCTTCTTACGGATTGGGC ATGGTCGCTGGTGAAGGAAGGAAGAGGGCTGGATGTGGTTGAAGACGGGATGCCGGAGCTAGGTGCTCCTGACGTGTTGGAGAGATATGTTCTAGTTGCG GTTCTTTGCTCACACCCTCAGCTGTATGCTAGGCCGACGATGGACCAGGTGGTGAAGATGTTGGAAACCGAGTTGGTAGTTCCATCCATCCCGCATCGGT CGATACCTTTGGTATCAGAAATGGATGATATCGAGAGATCGGTGAGCAGCACTTCTGGATCGGGGCAGCTGTTTTCGCCTTCCGGGTATCACTCATTTGG GTTTGGTCCTTCTGGAACCAAGGAAGAGGAGGGTCCGGGATCCAGGACATCGTAA
AA sequence Show only first row Show all	>Lus10042678 pacid=23181878 polypeptide=Lus10042678 locus=Lus10042678.g ID=Lus10042678.BGIv1.0 annot-version=v1.0 MKSPPQVKIPQPSRQQLLLLLLLLLPFPDVLNPSIISTAAAASMSVRLLLLLLAAFLTTSAAQNSTCPLDFTVLQRLYDGTNPPEIDPSQNCQYIRQGLR LVQSEYLLRTNNFLPPLATADSCWRAYQRLVNDSLPNFDIRSSCGFQTSWISQGCMNITTRQQFETLVTNSSLSDVVSSCDQPLENNSPCAACTASLSRV QALHLTGNSVGNVSDCQAYPSIYAAAFVNPLGPTDKGTAKCLFLLDFGSSKTTSKNKNKKKTLVVVGVCVGLIVAFFIVSGGLWFWRGKYGMTKRKRRKL NRLGIDNNNPLGKSTSLESITESTTLVKFKFDEIKKATRNFARDHIIGRGGYGNVYKGRLMDGSEVAVKRFKNCSAAGDASFAHEVEVIASVRHVNLVAL RGYCIATTSMEGHQRIIVCELMKNGSLHDHLLAGNENGKLTWPARQKIALGTAKGLAYLHYGAQPGIIHRDIKANNILLDDNFEAKVADFGLAKFNPEGM THLSTRVAGTMGYVAPEYALYGQLTERSDVYSYGVVLLELLSGKKALFKPDGGEDDAAQPCLLTDWAWSLVKEGRGLDVVEDGMPELGAPDVLERYVLVA VLCSHPQLYARPTMDQVVKMLETELVVPSIPHRSIPLVSEMDDIERSVSSTSGSGQLFSPSGYHSFGFGPSGTKEEEGPGSRTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042678 [exp]	0	1
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10004403 [exp]	1.0	0.8718
AT4G29850			Eukaryotic protein of unknown ...		Lus10016385 [exp]	3.7	0.8425
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Lus10027797 [exp]	4.5	0.8364
AT5G15870			glycosyl hydrolase family 81 p...		Lus10021987 [exp]	10.7	0.8269
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10030137 [exp]	11.6	0.8218
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023851 [exp]	12.2	0.8365
AT5G02090			unknown protein		Lus10024357 [exp]	13.2	0.8279
AT2G15220			Plant basic secretory protein ...		Lus10001360 [exp]	13.9	0.8002
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Lus10013240 [exp]	14.3	0.8080
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10036981 [exp]	16.2	0.8137

Compare expression of checked genes

Lus10042678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.