Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48010 663 / 0 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G11050 340 / 3e-108 Protein kinase superfamily protein (.1) AT5G18500 255 / 1e-77 Protein kinase superfamily protein (.1.2) AT3G24540 252 / 4e-76 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G56720 250 / 1e-75 Protein kinase superfamily protein (.1.2.3) AT2G42960 249 / 4e-75 Protein kinase superfamily protein (.1) AT3G26940 247 / 4e-75 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT4G23130 253 / 5e-75 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT3G59110 249 / 5e-75 Protein kinase superfamily protein (.1) AT1G01540 248 / 5e-75 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027971 [exp] 816 / 0 AT2G48010 646 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008186 [exp] 815 / 0 AT2G48010 647 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027972 [exp] 694 / 0 AT2G48010 601 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008187 [exp] 671 / 0 AT2G48010 660 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027970 [exp] 660 / 0 AT2G48010 653 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10029624 [exp] 548 / 0 AT2G48010 262 / 5e-80 receptor-like kinase in in flowers 3 (.1) Lus10029626 [exp] 503 / 1e-172 AT2G48010 672 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10042678 [exp] 504 / 2e-171 AT2G48010 781 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10029711 [exp] 336 / 1e-106 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136466 [exp] 710 / 0 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136400 [exp] 709 / 0 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.005G040200 [exp] 559 / 0 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 465 / 4e-158 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.017G132800 [exp] 350 / 6e-112 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.005G181800 [exp] 345 / 2e-110 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 346 / 3e-110 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 344 / 2e-109 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 259 / 2e-80 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.006G173800 [exp] 257 / 2e-79 AT1G52540 344 / 4e-117 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042679 pacid=23181952 polypeptide=Lus10042679 locus=Lus10042679.g ID=Lus10042679.BGIv1.0 annot-version=v1.0 ATGTCCGCCGTCCACCGACGTCTCCTCCTCTTCCACTTCCTCATCGCATCAGCTCTCACCCCATCCCTCGTCCTAGCCCAAAACAACAACACCATCGACC CTTGCCCACTCAACTTCTCCATCCTCCGACAGCTCGTAGCCAGCTCCGACCTACCTTCTCCCGTCGACCCTTCCCAAAACTGTCAGTACATCCGCCAGGG CCTCCGCCTCGTCCAGTCCGACTACCTCCGTCGCACCAACAACTTCCTCCCGCCACTCGCTGACGCCGACGCCTGCTGGCGCTCTTACCAGCGCTTCGCC GACGATTTCCTCCCAAACTTCGACATCCGCTCCTCCTGCGGCTTCCGCACCAGCTGGATCTCCCAGGGATGCGTCAACCTCACCACCAGAGCAGATTTCG AGTCCAGAATAGTTCGATCCTCTCTCGACGACGTTGTTTCCAACTGCAACCAGTCCCTCGAGAACCGCGCCCCTTGCGCCGGCTGCGTCTCCTCGCTCTC TCGCGTCCAGGGCTTGTACTTCACCGGTCCTTCTGTCGGTAACGTCTCCACCTGTTCCGCTTATCCTTCGATTTACGCCGCCGCGTTTGTCAATTTCCTA GGGCCTACCAATACCGGAACCGATAAGTGCTTGTTCTTGCTCGATTTCACTTCTAATAACCGTCGCAGCAAGAAATCGAAAGCCCTGATTCCGGCTGTTT CCGCCGCATTCGGCGTCATATTGTTGCTCATTGTCGTAATTGGAGGATTCTGTTTGGTTAGGAAGAGGAAATGGAATAAGAAGAAGAAGAAGAAAGAAAA GGAGGACAAATTAGAGATGGGATTGGATGCTGGATTGGTGAAATTCGATTACGAAGAGATCAAGAAAGCAACCAACGATTTCTCCGTAGATAACATCATA GGAAGAGGAGGGTTTGGAAACGTGTACAGAGGAAAAATGACAGACGGTACTGAAGTAGCTGTGAAGAGATTCAAGAACTGTTCAGCTTCCGGAGATGAGA GTTTCGCTCATGAAGTTGGCGTGATTGGCAGCATTAGGCATGTGAATTTGGTAGCATTGAGAGGATACTGCGTCGCCACTACTCCAGCTGTAGATGGTCA CCAGAGGATGATCATTTGTGAATTGATGAACAATGGGAGCCTCCAAGATCACTTGTTCGGAGATGCTTTGAAGTCGAAACTCAGCTGGCCGATTCGTCAG AAGATCGCATTGGGCACAGCGAGAGGTTTAGCTTATTTGCACACAGGGGCACAACCTACTATCATCCACAGAGACATCAAGGCGTCCAACATTTTGTTGG ACGACGAGTTCGAAGCCAAACTTGCTGATTTCGGGCTGGCGAAATCGAACCCGGAAGGAATGACACATCTCAGCACGAGAGTGGCCGGTACGTGGGGGTA TTTGGCTCCCGAGTATGCTTTGTATGGTCAGCTGACGGAGAGGAGCGATGTTTATAGCTACGGTGTAGTTCTGCTCGAGCTTTTGAGCGGGAGGAAGGCT CTATTGAGACACGATGGTGGTGGTGGTGATGGGAGTCAACCTTATCTTCTTGCGGATATGGCGTGGTCGTTGGCTAAAGAAGGAAGAACGATTGATCTGG TGGAAGAAGGGATGCCGGAGAGAGGCGAGGGTGATGTGTTGGAGCGGTACATTATGGTAGGAGTGCTATGTTCGCACCCGGAAATGCAGGCGAGGCCGAC GATGGAGCAGGTTGTGAAGATGTTGGAGTCGGAGGAGATGTCGATTCCTTCCATTCCGAACCGGCCGATGTTTGTGATGGGTGGTGGTGGTGATGATGTT GAGATGTCGATGGACAGCACAGGATTCTCGTCTTCTGGGTATCATCAACCTTATGGGTTTAAGACTGATGCTGGTGGAGGACGCAAAGATGGAGAGTCGG ACTCTGGGACATCCGGATCTCCGTGA
AA sequence Show only first row Show all	>Lus10042679 pacid=23181952 polypeptide=Lus10042679 locus=Lus10042679.g ID=Lus10042679.BGIv1.0 annot-version=v1.0 MSAVHRRLLLFHFLIASALTPSLVLAQNNNTIDPCPLNFSILRQLVASSDLPSPVDPSQNCQYIRQGLRLVQSDYLRRTNNFLPPLADADACWRSYQRFA DDFLPNFDIRSSCGFRTSWISQGCVNLTTRADFESRIVRSSLDDVVSNCNQSLENRAPCAGCVSSLSRVQGLYFTGPSVGNVSTCSAYPSIYAAAFVNFL GPTNTGTDKCLFLLDFTSNNRRSKKSKALIPAVSAAFGVILLLIVVIGGFCLVRKRKWNKKKKKKEKEDKLEMGLDAGLVKFDYEEIKKATNDFSVDNII GRGGFGNVYRGKMTDGTEVAVKRFKNCSASGDESFAHEVGVIGSIRHVNLVALRGYCVATTPAVDGHQRMIICELMNNGSLQDHLFGDALKSKLSWPIRQ KIALGTARGLAYLHTGAQPTIIHRDIKASNILLDDEFEAKLADFGLAKSNPEGMTHLSTRVAGTWGYLAPEYALYGQLTERSDVYSYGVVLLELLSGRKA LLRHDGGGGDGSQPYLLADMAWSLAKEGRTIDLVEEGMPERGEGDVLERYIMVGVLCSHPEMQARPTMEQVVKMLESEEMSIPSIPNRPMFVMGGGGDDV EMSMDSTGFSSSGYHQPYGFKTDAGGGRKDGESDSGTSGSP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042679 [exp]	0	1
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10022023 [exp]	1.7	0.9097
AT1G69910			Protein kinase superfamily pro...		Lus10036691 [exp]	2.4	0.8893
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	3.7	0.8949
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10026530 [exp]	3.9	0.8821
AT1G12050			fumarylacetoacetase, putative ...		Lus10003798 [exp]	4.1	0.8444
AT1G15710			prephenate dehydrogenase famil...		Lus10011483 [exp]	4.5	0.8843
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Lus10030679 [exp]	4.6	0.8720
AT3G19330			Protein of unknown function (D...		Lus10031977 [exp]	5.7	0.8589
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10009747 [exp]	6.0	0.8724
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10020216 [exp]	7.1	0.8621

Compare expression of checked genes

Lus10042679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.