Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03430 141 / 2e-43 AHP5 histidine-containing phosphotransfer factor 5 (.1) AT5G39340 137 / 1e-41 ATHP2, AHP3 ARABIDOPSIS THALIANA HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2, histidine-containing phosphotransmitter 3 (.1) AT3G29350 136 / 3e-41 ATHP1, AHP2 histidine-containing phosphotransmitter 2 (.1.2) AT3G21510 124 / 1e-36 ATHP3, AHP1 histidine-containing phosphotransmitter 1 (.1) AT3G16360 107 / 7e-30 AHP4 HPT phosphotransmitter 4 (.1.2) AT4G04402 67 / 2e-14 two-component phosphorelay mediator, putative (.1) AT1G80100 64 / 6e-13 AHP6 histidine phosphotransfer protein 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012777 [exp] 132 / 1e-39 AT3G21510 216 / 5e-73 histidine-containing phosphotransmitter 1 (.1) Lus10033999 [exp] 131 / 3e-39 AT3G21510 216 / 3e-73 histidine-containing phosphotransmitter 1 (.1) Lus10000926 [exp] 131 / 4e-39 AT3G21510 181 / 3e-59 histidine-containing phosphotransmitter 1 (.1) Lus10029623 [exp] 123 / 7e-37 AT1G03430 63 / 8e-14 histidine-containing phosphotransfer factor 5 (.1) Lus10002256 [exp] 122 / 6e-36 AT3G21510 154 / 3e-49 histidine-containing phosphotransmitter 1 (.1) Lus10027965 [exp] 98 / 2e-26 AT1G03430 119 / 2e-35 histidine-containing phosphotransfer factor 5 (.1) Lus10025821 [exp] 91 / 2e-23 AT3G16360 226 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10038280 [exp] 88 / 2e-22 AT3G16360 225 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10023127 [exp] 86 / 2e-21 AT1G80100 178 / 5e-58 histidine phosphotransfer protein 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G113500 [exp] 165 / 1e-52 AT1G03430 210 / 1e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.006G098200 [exp] 157 / 9e-50 AT1G03430 207 / 7e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.014G136200 [exp] 148 / 3e-46 AT1G03430 163 / 2e-52 histidine-containing phosphotransfer factor 5 (.1) Potri.005G040400 [exp] 138 / 3e-42 AT3G21510 181 / 1e-59 histidine-containing phosphotransmitter 1 (.1) Potri.013G028300 [exp] 136 / 2e-41 AT3G21510 183 / 2e-60 histidine-containing phosphotransmitter 1 (.1) Potri.010G027100 [exp] 125 / 5e-37 AT3G21510 206 / 5e-69 histidine-containing phosphotransmitter 1 (.1) Potri.008G197600 [exp] 121 / 1e-35 AT3G21510 193 / 3e-64 histidine-containing phosphotransmitter 1 (.1) Potri.001G189900 [exp] 101 / 1e-27 AT3G16360 239 / 1e-82 HPT phosphotransmitter 4 (.1.2) Potri.018G046800 [exp] 100 / 3e-27 AT3G16360 170 / 3e-55 HPT phosphotransmitter 4 (.1.2) Potri.003G032400 [exp] 96 / 3e-25 AT1G80100 204 / 2e-68 histidine phosphotransfer protein 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01627 [flax] [poplar] Hpt Hpt domain
Representative CDS sequence Show only first row Show all	>Lus10042680 pacid=23181954 polypeptide=Lus10042680 locus=Lus10042680.g ID=Lus10042680.BGIv1.0 annot-version=v1.0 ATGTCGAATTTCAATACCCCAAACCAGCAGCAGCAGTCCCCATCTCCCATCATTCCACCGGCTGTCATCAACGCTCACGCTCTGTCCCAAATGCGGAAGG AGATTGCCGATATCACCAACTATCTACATCGCCAAGGATTTCTGGACGGGGAGTTCACTAGGCTTCAGGAACTTCAAGATAGGAGTTGTCCTGATTTTGT AATTAAGGTTGCGAAAGTCTTCTTCAAGGACTGTCAGCAGATTATTAACGACTTGGATATTGCTCTCCAACTACAAGTTGTAGATTTCAAAAAGGTACTT GCTAGGGTTCATCAACTGAAAGGTAGTAGTTCCAGCTTTGGTGCAGCAAGGATCCATGAGATATGCATCAAACTAAGACCTCTTTGCGAGTCACAAAATC GTGACGGGTGCATCAAATACTTTCATGAATTGCACAATGAAGCTGTTGCGTTGTATAACAAGCTTCAAATTCTTTTCTGGTACGAGCTGCAGTTGATAAA CGCTGGTGGAACATTACCTGAAGTTCAATGA
AA sequence Show only first row Show all	>Lus10042680 pacid=23181954 polypeptide=Lus10042680 locus=Lus10042680.g ID=Lus10042680.BGIv1.0 annot-version=v1.0 MSNFNTPNQQQQSPSPIIPPAVINAHALSQMRKEIADITNYLHRQGFLDGEFTRLQELQDRSCPDFVIKVAKVFFKDCQQIINDLDIALQLQVVDFKKVL ARVHQLKGSSSSFGAARIHEICIKLRPLCESQNRDGCIKYFHELHNEAVALYNKLQILFWYELQLINAGGTLPEVQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10042680 [exp]	0	1
AT3G02250			O-fucosyltransferase family pr...		Lus10036833 [exp]	5.8	0.8111
					Lus10025489 [exp]	6.3	0.7592
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Lus10024296 [exp]	13.7	0.7715
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10024661 [exp]	14.3	0.7926
AT4G15040			Subtilisin-like serine endopep...		Lus10028843 [exp]	15.5	0.7275
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023021 [exp]	16.1	0.8075
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Lus10040253 [exp]	28.1	0.7716
AT2G04845			Acyl-CoA N-acyltransferases (N...		Lus10006397 [exp]	40.2	0.7714
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030656 [exp]	42.9	0.7679
AT5G26770			unknown protein		Lus10031444 [exp]	43.6	0.7660

Compare expression of checked genes

Lus10042680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.