Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03010 204 / 2e-63 RNI-like superfamily protein (.1) AT1G03440 202 / 1e-62 Leucine-rich repeat (LRR) family protein (.1) AT3G17640 94 / 9e-22 Leucine-rich repeat (LRR) family protein (.1) AT3G24240 57 / 5e-09 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G44700 55 / 3e-08 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G23400 53 / 8e-08 Leucine-rich repeat (LRR) family protein (.1) AT1G74200 51 / 3e-07 AtRLP16 receptor like protein 16 (.1) AT3G51740 50 / 1e-06 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT1G33600 48 / 3e-06 Leucine-rich repeat (LRR) family protein (.1) AT5G07280 49 / 4e-06 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029622 [exp] 287 / 9e-96 AT1G03440 534 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10008190 [exp] 219 / 5e-69 AT1G03440 576 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10031601 [exp] 206 / 3e-64 AT1G03440 463 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10027968 [exp] 166 / 3e-52 AT1G03440 160 / 2e-49 Leucine-rich repeat (LRR) family protein (.1) Lus10033744 [exp] 94 / 3e-22 AT4G03010 244 / 3e-84 RNI-like superfamily protein (.1) Lus10027967 [exp] 70 / 1e-13 AT1G03440 268 / 3e-92 Leucine-rich repeat (LRR) family protein (.1) Lus10039958 [exp] 54 / 7e-08 AT5G44700 152 / 3e-40 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) Lus10002937 [exp] 52 / 2e-07 AT1G33590 559 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10037108 [exp] 50 / 6e-07 AT5G61240 550 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136100 [exp] 217 / 2e-68 AT1G03440 541 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.011G023500 [exp] 106 / 5e-26 AT3G17640 350 / 2e-118 Leucine-rich repeat (LRR) family protein (.1) Potri.004G001000 [exp] 103 / 3e-25 AT3G17640 386 / 1e-132 Leucine-rich repeat (LRR) family protein (.1) Potri.017G050600 [exp] 55 / 3e-08 AT2G02220 407 / 2e-129 phytosulfokin receptor 1 (.1) Potri.007G001000 [exp] 54 / 3e-08 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.011G139700 [exp] 53 / 1e-07 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.009G081800 [exp] 52 / 2e-07 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.010G052800 [exp] 52 / 3e-07 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G237400 [exp] 50 / 8e-07 AT2G25790 885 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G082900 [exp] 49 / 2e-06 AT1G56140 1097 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042681 pacid=23182022 polypeptide=Lus10042681 locus=Lus10042681.g ID=Lus10042681.BGIv1.0 annot-version=v1.0 ATGCCACACCCACCAGGGCGGCGCTCCTCCGTTGCTCAGCGCGGCAAATTTGGTCGACCCGAGTGCCGGCTCTCCGGGTCTCATCGGAAACCTCGACGCA GGCATCGGCAAGCTCACTGCTCTCGCCGAGCTCACCATCGTCCCCGGTCGGGTCATGGGCTCCATACCCGACTCCATCTCCCAGCTCACGGAGCTCCGAT TCCTTGCGATCAACCGCAACTTCCTCACCGGAGCTATTCCCGATTCCATCTCCCGCCTCACGAATCTCAGAACCCTCGATCTCAGCTACAACCAGCTCAC GGGAACCGTCCCGCCGTCGATTGGGTCTATACCCGGACTATCCAATCTCATCCTCTGCCACAACCACCTCTGGGGTTCCGTCCCTGCCTTCGGTTCGCGG AGCCTGACCCGCGTCGAGCTGGTCGAATCTTTACTTTCCCGATAACCAACCTCCACCTGCAGAGGAATTTGTTCACCGGTCCGGTTCAACCGGGTGGACA TAAGGTTTTGATCCCGATCGTTGATCTCAGCTATAACAGACTTTCCGGTCGGATACCTTCAATGTTTTCCACGGTGCAGAATCTGTACCTGAATAATAAC CGGTTTATCGGGGAGGTTCCTAGTAGCCTGGTGGAGAGATTGCTTGCGGGGAAAATGGAGACGTTGTATTTGCAGCATAATTATTTGACGGGGATCAAGA TTAATCCGGCGGCGGGGATTCCGGCGAGGAGCTCGATGTGCTTGCAGTACAATTGTATGGTGCCGCCGGTGCAGAGTCCTTGTCCTTTGAAGGCTGGGAG GCAGAAGGTGAGGCCGTTTGATCAGTGCAAGGAGTGGAAGGGGTAA
AA sequence Show only first row Show all	>Lus10042681 pacid=23182022 polypeptide=Lus10042681 locus=Lus10042681.g ID=Lus10042681.BGIv1.0 annot-version=v1.0 MPHPPGRRSSVAQRGKFGRPECRLSGSHRKPRRRHRQAHCSRRAHHRPRSGHGLHTRLHLPAHGAPIPCDQPQLPHRSYSRFHLPPHESQNPRSQLQPAH GNRPAVDWVYTRTIQSHPLPQPPLGFRPCLRFAEPDPRRAGRIFTFPITNLHLQRNLFTGPVQPGGHKVLIPIVDLSYNRLSGRIPSMFSTVQNLYLNNN RFIGEVPSSLVERLLAGKMETLYLQHNYLTGIKINPAAGIPARSSMCLQYNCMVPPVQSPCPLKAGRQKVRPFDQCKEWKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03010			RNI-like superfamily protein (...		Lus10042681 [exp]	0	1
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Lus10033097 [exp]	2.0	0.8895
AT5G58300			Leucine-rich repeat protein ki...		Lus10034257 [exp]	8.7	0.8703
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10009054 [exp]	10.2	0.8638
AT2G46630			unknown protein		Lus10030217 [exp]	10.2	0.8838
AT5G58300			Leucine-rich repeat protein ki...		Lus10029005 [exp]	11.5	0.8555
AT5G49100			unknown protein		Lus10006504 [exp]	14.3	0.8012
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10029622 [exp]	14.7	0.8210
AT3G16330			unknown protein		Lus10038274 [exp]	15.1	0.8763
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10022493 [exp]	15.1	0.8341
AT2G46630			unknown protein		Lus10005994 [exp]	16.2	0.8689

Compare expression of checked genes

Lus10042681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.