Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03020 749 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT2G43770 94 / 8e-21 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 73 / 3e-13 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 72 / 3e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 72 / 4e-13 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 71 / 4e-13 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 70 / 2e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08560 69 / 3e-12 transducin family protein / WD-40 repeat family protein (.1.2) AT1G15440 69 / 5e-12 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT5G52820 67 / 1e-11 WD-40 repeat family protein / notchless protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029621 [exp] 837 / 0 AT4G03020 658 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10012779 [exp] 625 / 0 AT4G03020 629 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10033996 [exp] 620 / 0 AT4G03020 629 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10012230 [exp] 89 / 4e-19 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 86 / 4e-18 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10001046 [exp] 80 / 1e-15 AT5G08560 713 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001411 [exp] 80 / 1e-15 AT5G08560 695 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10014674 [exp] 77 / 2e-15 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 73 / 6e-14 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136000 [exp] 801 / 0 AT4G03020 741 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G026800 [exp] 668 / 0 AT4G03020 676 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G197200 [exp] 528 / 0 AT4G03020 534 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.019G096900 [exp] 94 / 5e-21 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 75 / 3e-14 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 73 / 2e-13 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 71 / 7e-13 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 69 / 1e-12 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 68 / 3e-12 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 68 / 1e-11 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10042682 pacid=23181741 polypeptide=Lus10042682 locus=Lus10042682.g ID=Lus10042682.BGIv1.0 annot-version=v1.0 ATGATCTTCGTTGCTGTCAATTCTTCAACTGACGGGATGGGTTATGCCATGAGTAGATTGGAGATAGAATCTCAGCTGTGTGATGAGGAAGAGACTGTCA ATGAAGTTGGTGGTGGAAGCCACCAGCATAAGTCTCCTAACAAATCGGTAGAGAAATTGGACCATGAAGTTGCTCAGGATACTAGCCTAAAATCTCAGCC CCATAGACGGCTCAAACAGGAGATACCTGGGGAGAGACAGTTCCCAGTCTCTCCTGTAAAGATGTTGGCCGGTCGAGAAGGTAATTTTTCCGGAAGAGGG AGGTTCTCGCGAGCTGATCAGTGTCATATGCTCAGCAGATATTTGCCTGCTGATGGCCCTTGGCTTGTCGATCGAATGAATAGCCGAGCTTATGTCTCAC AGTTTTCTGCTGATGGTACCTTGTTTGTTGCTGGCTTTCAGGGAAGCCATATTAAAGTATACAATGTTGAGAAAGGGTGGAAAGTTCAGAAGGATATTCG TGCCAGAAGTTTACGTTGGACAGTTACAGATACCTCTCTGTCTCCGGATCAACGGTTTCTTGTCTATGCTAGTATGTGCCCTATTGTGCACATTGTTAAC ATCGGATCATCAACAATGGAATCAGTTGCAAATGTTACGGAGATTCATGATGGTTTAGACTTTTCTGATGAAGACGATGGGGGCTATGCTTTCGGGATCT TCTCAGTAAAATTTTCTACTGATGGTCGTGAACTAGTTGCTGGAAGTAGTGATGATGCTATATATGTCTATGATCTCGAAACTAATAAGCGCTCTCTCAG AATCCTAGCACACACATCTGATGTGAACACCGTCTGTTTTGCTGATGAGAGTGGGCATCTGATCTACTCCGGGAGTGATGATAATCTCTGCAAGGTGTGG GATAGACGTTGCTTCATAGCAAAAGGGAAGCCTGCAGGAGTCCTAACGGGACATATCGAAGGAATTACAGATATAGACAGCCGTGGAGATGACCGATATT TAATATCAAACGGGAAAGATCAGACAATCAAACTTTGGGATATCAGGAAAATGGCCCCCAATGCTACGAGCTCTTTAGGGATCAGGAATTATGAATGGGA TTACAGATGGATGGACTACCCACCACCAGCTAGAGACTTGAAGCATCCATGCGATTTGTCCGTGGCTACTTATAAAGGTCACTCAGTTCTCCGAACGCTT ATTCGCTGCTATTTCTCACCAACTTATAGCACCGGCCAGAAATACATTTACACCGGATCTCACGACTCTTCTGTTTACATTTATGATGTGGCGACTGGGG AGGTAGCTGGAGTGCTGAAACATCATAACTCACCGGTAAGAGATTGCAGTTGGCACCCGCACTATCCTATGCTGGTGAGCTCTTCATGGGATGGGGATAT AGTGAGGTGGGAGTTCGTCGGCAATGGAGAAGCTCCGATGCCTATGACCAAGAAACGACTACGCAGAAGGCAATACTACGAAGTCTGA
AA sequence Show only first row Show all	>Lus10042682 pacid=23181741 polypeptide=Lus10042682 locus=Lus10042682.g ID=Lus10042682.BGIv1.0 annot-version=v1.0 MIFVAVNSSTDGMGYAMSRLEIESQLCDEEETVNEVGGGSHQHKSPNKSVEKLDHEVAQDTSLKSQPHRRLKQEIPGERQFPVSPVKMLAGREGNFSGRG RFSRADQCHMLSRYLPADGPWLVDRMNSRAYVSQFSADGTLFVAGFQGSHIKVYNVEKGWKVQKDIRARSLRWTVTDTSLSPDQRFLVYASMCPIVHIVN IGSSTMESVANVTEIHDGLDFSDEDDGGYAFGIFSVKFSTDGRELVAGSSDDAIYVYDLETNKRSLRILAHTSDVNTVCFADESGHLIYSGSDDNLCKVW DRRCFIAKGKPAGVLTGHIEGITDIDSRGDDRYLISNGKDQTIKLWDIRKMAPNATSSLGIRNYEWDYRWMDYPPPARDLKHPCDLSVATYKGHSVLRTL IRCYFSPTYSTGQKYIYTGSHDSSVYIYDVATGEVAGVLKHHNSPVRDCSWHPHYPMLVSSSWDGDIVRWEFVGNGEAPMPMTKKRLRRRQYYEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03020			transducin family protein / WD...		Lus10042682 [exp]	0	1
AT5G47860			Protein of unknown function (D...		Lus10008591 [exp]	1.0	0.9548
AT2G45530			RING/U-box superfamily protein...		Lus10008286 [exp]	2.0	0.9468
AT1G78070			Transducin/WD40 repeat-like su...		Lus10041102 [exp]	2.4	0.9392
AT1G50440			RING/FYVE/PHD zinc finger supe...		Lus10033381 [exp]	4.5	0.9271
AT4G03020			transducin family protein / WD...		Lus10029621 [exp]	4.9	0.9028
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Lus10010505 [exp]	6.0	0.9203
AT5G01260			Carbohydrate-binding-like fold...		Lus10002495 [exp]	6.3	0.9299
AT2G45530			RING/U-box superfamily protein...		Lus10033252 [exp]	6.7	0.8989
AT1G33780			Protein of unknown function (D...		Lus10001286 [exp]	7.2	0.9027
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Lus10020027 [exp]	7.9	0.9112

Compare expression of checked genes

Lus10042682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.