Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30780 451 / 2e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G48000 349 / 5e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48730 93 / 6e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39620 80 / 9e-16 ATPPR5, EMB2453 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G16010 80 / 2e-15 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G06430 77 / 9e-15 AtPPR2, EMB2750 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 71 / 1e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02820 70 / 2e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G59040 67 / 2e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G62590 67 / 2e-11 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029620 [exp] 971 / 0 AT2G30780 455 / 5e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011849 [exp] 84 / 9e-17 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022787 [exp] 84 / 9e-17 AT5G48730 687 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017134 [exp] 78 / 7e-15 AT2G35130 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10022128 [exp] 74 / 7e-14 AT2G15630 75 / 2e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 74 / 2e-13 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 73 / 2e-13 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011464 [exp] 73 / 2e-13 AT3G16010 888 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018318 [exp] 71 / 1e-12 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G119600 [exp] 483 / 2e-166 AT2G30780 432 / 1e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G082400 [exp] 89 / 1e-18 AT4G39620 625 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G243000 [exp] 88 / 2e-18 AT2G30780 84 / 4e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G243600 [exp] 86 / 2e-17 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G153900 [exp] 82 / 2e-16 AT3G06430 717 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G123600 [exp] 81 / 6e-16 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G180000 [exp] 72 / 4e-13 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.009G058300 [exp] 71 / 1e-12 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G220300 [exp] 71 / 1e-12 AT3G59040 811 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G034200 [exp] 69 / 4e-12 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042683 pacid=23181836 polypeptide=Lus10042683 locus=Lus10042683.g ID=Lus10042683.BGIv1.0 annot-version=v1.0 ATGAAGCGAGTTCGCAAAATCTCCGACGCCGCCGCCGCAGCAGGGCAACCTGAGCAGCTGTTCTGCCTCCGCCATAGATCACCTTCCAATCCCAGAATAG CCCTAACTTCTCCTTACTCCCTCGTCCTTGCCAAATCCTCAGGTTGCGGCTTCTCCAGGGAACTCGGCATAGGCTCTTCCTCCTCCTCCTCTTCCGTAGG TATTTGCCGTAGTAGTAGCAGTGTGTATGATCTTTTCATCAATAAGTTTTCCCCTGCCGTTGTTGACACTCGTGGGAAGGAGCTTCTTGAGGAGAAAGTC TCCCGCTTGGCGTACACTCTGATCCAGCATGCTGAGGATTTCGATAAAGTTGCTGAGATTTTGGAGGATAAAGGCAGCTACTTGTTCAGGAGGTATAACG ATGGATCCGCTTTCCTTGAGTTGTTGACCATTTTGGGTCATTCCTCGCCGCAATTCGCTCTTGAGGTTTTTTACTGGAGGAGGACACAAACGGAGTTGAA CGTTCCTTTAACATCAGAGGAGTACGCCAAGGCGATTGCCCTTGCCGGTAGGGTGAAGGATGTGGTACTCGCGGCAGAGATTTTCTATGAGGCTTGCGGT AATCGTATCAAAACGACTGCGACTTATAATGCGCTGATGAGTGCTTATATGATCAATAGTCTCTCTGATAAATGCACATTATTGTTTAATGAGTTGAAGA GGGAAGCAAATTGCTACCCTTCGATGATTTCGTATAACATATTGATCTCGGTCTATGGTCGGCTGTTGCTAGTCAATAAGATGGAGGCTTGTTTCCGGGA GGCGAAGAATTCGAACCTCACCCCGACTTTGTGCACATACAACTATCTAATTGCTGGTTATTTAACTGCTTGGAATTGGGACGGCATGGAGAGAACTTTA CAGACGATGAAGTCTGCTTATATTGAGCCTGATATTCAGACTCGGTTACTTCTGCTTCGAGGCTATGCGCATTCCGATAATTTGGTGAAGATGGAAGAGG TATATGAATTGGTTAAAGATCATGTTAATGTAAAGGCACGTCCTTTGATTCGTGCTATGATCTGTGCTTATTGCAAGAGTTCTGTTCCAGATAAGCTGAG TAAGATTGAGGCACTGCTTCAGCATATTCCACCGGAGGAGTATATGCCTTGGTTGAATGTGTTGCTAATTAGGGTGTATGCTCAAGAAGGTTGCTTTGAG AAGATGGAAAAGTCGATTTACGAGGCATTTGAGCATCAAACCACTGTAACAGCTCACACTGTGATGAAAGCTATATCGTCGGGTTATTTCAAAAGCAATG CTGTCGATAAACTCGCTGTGTTTGTAAAAAGGGCTGAAGCTGCTGGATGGAGGATATGTCGTAGTTTGTATCATTGCAAAATGGTGATGTATGGATCGGA AAAGCGATTGAAGGAGATGGAGAGTGTTCTCCCCGAGATGGATAATTTCAACCTGGATTGCACAAAGAAAACATTTTACATACTGTACAGGTCTTATTTA ATGTGGGATCAAAGACATAAGGCCAAACAAGTAATAGGATTGCTTTACAAGCGTGGACATGGGGTTCCTGTTGATGCTTCTTTGTCATAA
AA sequence Show only first row Show all	>Lus10042683 pacid=23181836 polypeptide=Lus10042683 locus=Lus10042683.g ID=Lus10042683.BGIv1.0 annot-version=v1.0 MKRVRKISDAAAAAGQPEQLFCLRHRSPSNPRIALTSPYSLVLAKSSGCGFSRELGIGSSSSSSSVGICRSSSSVYDLFINKFSPAVVDTRGKELLEEKV SRLAYTLIQHAEDFDKVAEILEDKGSYLFRRYNDGSAFLELLTILGHSSPQFALEVFYWRRTQTELNVPLTSEEYAKAIALAGRVKDVVLAAEIFYEACG NRIKTTATYNALMSAYMINSLSDKCTLLFNELKREANCYPSMISYNILISVYGRLLLVNKMEACFREAKNSNLTPTLCTYNYLIAGYLTAWNWDGMERTL QTMKSAYIEPDIQTRLLLLRGYAHSDNLVKMEEVYELVKDHVNVKARPLIRAMICAYCKSSVPDKLSKIEALLQHIPPEEYMPWLNVLLIRVYAQEGCFE KMEKSIYEAFEHQTTVTAHTVMKAISSGYFKSNAVDKLAVFVKRAEAAGWRICRSLYHCKMVMYGSEKRLKEMESVLPEMDNFNLDCTKKTFYILYRSYL MWDQRHKAKQVIGLLYKRGHGVPVDASLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10042683 [exp]	0	1
AT5G09840			Putative endonuclease or glyco...		Lus10033511 [exp]	3.0	0.9287
AT4G04670			Met-10+ like family protein / ...		Lus10002756 [exp]	4.6	0.8811
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10023360 [exp]	4.9	0.9129
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10004706 [exp]	7.4	0.8912
AT5G05520			Outer membrane OMP85 family pr...		Lus10007514 [exp]	8.7	0.9020
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10012971 [exp]	8.7	0.8686
AT3G60400			Mitochondrial transcription te...		Lus10013142 [exp]	9.4	0.8670
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026919 [exp]	11.0	0.8817
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10024704 [exp]	11.8	0.9044
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10013988 [exp]	13.6	0.9069

Compare expression of checked genes

Lus10042683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.