Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02920 200 / 3e-60 unknown protein AT1G03340 139 / 2e-37 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029640 [exp] 662 / 0 AT4G02920 250 / 3e-79 unknown protein Lus10027996 [exp] 341 / 4e-115 AT4G02920 254 / 4e-81 unknown protein Lus10008158 [exp] 331 / 3e-111 AT4G02920 248 / 1e-78 unknown protein Lus10008160 [exp] 291 / 2e-96 AT4G02920 209 / 3e-64 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G138200 [exp] 299 / 2e-98 AT4G02920 276 / 4e-89 unknown protein Potri.002G215800 [exp] 285 / 4e-93 AT4G02920 290 / 2e-94 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042685 pacid=23182017 polypeptide=Lus10042685 locus=Lus10042685.g ID=Lus10042685.BGIv1.0 annot-version=v1.0 ATGGAAAAGCTTTGCTTGATGGCTTCTCATGGCTACCCTCATGGTCCTGGGCTCTTCCTTCATCAAGAGCAAACCAAGGTTGTCAAGGATTGTCAACCTT TTCTACCTAACATGGTGTCAGGACAAGAGATGATGTGGACGAATTCTATTCATCTGAATCTTCCTCATCAGCGTGAGGAAATAAGGAATCCTATGATTGG AGTTGAACTGGCCAATCGCTTTGCCAAGATGGATTCTTCAACCTTTGGAGAGCCTTTGTTTGTCAATTTGACAGATGAACAATACACTAGCCACGATAGT ACAATGGAGTTCCTCAAATCTCGTTGGAGCGAGTTCGAAACAGGAGGATTATTTTCTTCCGAAGCATCTGATCTGACGGGACTTCACACGTTGCAATTCC CAGCGGACCTGGAAGCATACAGCCCGGAAACTACAACGAATGGCGAATTTGACGACTACATGAACCCTTTAATGGACTTTGTTGGAGATATGGTTCGCAA GATTAAGGACATCGTCCCCATTGTTGCTGAGTTCTACCTGGCAAATAGTTCCAGAACTTGGAGAAAACATTCAGCGGTCATCCCCCATTTTACCTGGTTT GATACGTATGGATCAGAATTTGCTTCATTGAATATCCAAAATATGACTGTTACGCCTTTGGATAGTCCCGAGAAAGTAAAGGTGAAGCAATCAGGCAAGA GGAAAAGTAGCAGCAGGAGAGGGAGCACAGTTCGCGATCTTCACAAGCGGAACTACTTCCATGCATGTGAGAGCCTTCTTTCCTTGATGATGAACAAGAA ACACAATAGCAGAGCTGCTATACTGTCACTGAAGAAATCAGGCCCCGAACTTCCGGAGTTGCTGACCCAGTTCTCTGCTGGCATTGCTGGCACCGGCATT GCCATTCTATTCACCGTTGCATGCAAGGTCGCTTCTGGTACGGTACCCTTGTGCACGTCCAAACTCCTAAGCACAGGGTTAGGTGTTATAATGGTCTGGC TATCTTGGTCAGTGAATAAACTACGAGACACCATAGCTAATGTGAGCAAGAATGCAAGCAAGAGCCTCGACAATGAAGCAGTGATGATTATCACGGTTGA CAAAAGTTTGAAGGATGTGTACTTCAGAGCTGCAACATTGCTCGCGGTTGCTGTTCTAAGAGTTGCATGA
AA sequence Show only first row Show all	>Lus10042685 pacid=23182017 polypeptide=Lus10042685 locus=Lus10042685.g ID=Lus10042685.BGIv1.0 annot-version=v1.0 MEKLCLMASHGYPHGPGLFLHQEQTKVVKDCQPFLPNMVSGQEMMWTNSIHLNLPHQREEIRNPMIGVELANRFAKMDSSTFGEPLFVNLTDEQYTSHDS TMEFLKSRWSEFETGGLFSSEASDLTGLHTLQFPADLEAYSPETTTNGEFDDYMNPLMDFVGDMVRKIKDIVPIVAEFYLANSSRTWRKHSAVIPHFTWF DTYGSEFASLNIQNMTVTPLDSPEKVKVKQSGKRKSSSRRGSTVRDLHKRNYFHACESLLSLMMNKKHNSRAAILSLKKSGPELPELLTQFSAGIAGTGI AILFTVACKVASGTVPLCTSKLLSTGLGVIMVWLSWSVNKLRDTIANVSKNASKSLDNEAVMIITVDKSLKDVYFRAATLLAVAVLRVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02920			unknown protein		Lus10042685 [exp]	0	1
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10039740 [exp]	1.4	0.9320
AT1G69870		NRT1.7	nitrate transporter 1.7 (.1)		Lus10036705 [exp]	4.4	0.8889
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10025676 [exp]	4.5	0.9303
AT1G42550		PMI1	plastid movement impaired1 (.1...		Lus10039886 [exp]	4.9	0.9245
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10005411 [exp]	5.3	0.9153
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10042432 [exp]	5.7	0.8738
AT1G42550		PMI1	plastid movement impaired1 (.1...		Lus10002170 [exp]	6.3	0.9082
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017718 [exp]	6.5	0.9171
AT4G02920			unknown protein		Lus10029640 [exp]	7.5	0.9255
AT3G21670			Major facilitator superfamily ...		Lus10030006 [exp]	7.5	0.8953

Compare expression of checked genes

Lus10042685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.