Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48100 362 / 1e-124 C2H2ZnF Exonuclease family protein (.1.2.3.4) AT3G27970 335 / 6e-114 Exonuclease family protein (.1) AT5G40310 321 / 2e-108 C2H2ZnF Exonuclease family protein (.1) AT3G15080 82 / 1e-17 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G50100 74 / 3e-14 SDN1 small RNA degrading nuclease 1 (.1) AT5G05540 62 / 1e-10 SDN2 small RNA degrading nuclease 2 (.1.2) AT5G67240 59 / 3e-09 SDN3 small RNA degrading nuclease 3 (.1.2) AT3G50090 53 / 1e-07 Exonuclease family protein (.1) AT5G25800 53 / 2e-07 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029642 [exp] 671 / 0 AT2G48100 382 / 3e-132 Exonuclease family protein (.1.2.3.4) Lus10022230 [exp] 347 / 2e-118 AT3G27970 585 / 0.0 Exonuclease family protein (.1) Lus10008787 [exp] 344 / 2e-117 AT3G27970 583 / 0.0 Exonuclease family protein (.1) Lus10011026 [exp] 89 / 6e-20 AT3G15080 283 / 2e-96 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000997 [exp] 89 / 7e-20 AT3G15080 325 / 4e-112 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10011505 [exp] 68 / 2e-12 AT5G67240 358 / 1e-116 small RNA degrading nuclease 3 (.1.2) Lus10011504 [exp] 66 / 2e-11 AT5G67240 370 / 5e-119 small RNA degrading nuclease 3 (.1.2) Lus10019321 [exp] 64 / 4e-11 AT5G67240 378 / 1e-122 small RNA degrading nuclease 3 (.1.2) Lus10028637 [exp] 49 / 4e-06 AT5G25800 641 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G215700 [exp] 427 / 4e-150 AT2G48100 374 / 3e-129 Exonuclease family protein (.1.2.3.4) Potri.017G073300 [exp] 348 / 4e-119 AT3G27970 577 / 0.0 Exonuclease family protein (.1) Potri.001G373500 [exp] 88 / 1e-19 AT3G15080 346 / 1e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.007G048000 [exp] 62 / 3e-10 AT5G67240 402 / 4e-132 small RNA degrading nuclease 3 (.1.2) Potri.005G186600 [exp] 52 / 3e-07 AT5G25800 752 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10042687 pacid=23181707 polypeptide=Lus10042687 locus=Lus10042687.g ID=Lus10042687.BGIv1.0 annot-version=v1.0 ATGGATTATGAGCACGACCCACCTTCAAAAACCCCAACCAAGAGACACAGATGCTCTGCATGCTTCAAGCAATTTAAGAGAAAGGACCATCTCGTTCAAC ACATGAAGATATCATACCACTCTCACCATCAGCCGAAATGTGGCATTTGTCTAAAGCATTGCAAATCCTTTCAGTCCTTGAGAGAGCATCTTGCAGGTTC ATTGCCAAGATCATCTTGCTCCAAGATTTTCACAGACCGAGGTTGTGATCTTTGCTTGAATGTTTTTGATGATGCCAATGATCTTAGCAACCATAGAGAA AAATGCCGCTTATCTGCACCTTCTCCCTTGGCAACTAAGATTTCGTCAACAGATGCTTTAATGTATGGCCGTGGATCGGCTGGGGGAAAATGTGTGGGTG GAAATAAGAAAGCCATCGCGATCGATTGTGAAATGGTCGGTGGTGGTGATGATGGGACGATTGACTTATGTGGCCAGGTATGCCTGGTTGATGAAGATGA AAATATTGTTTTCCACTCATATGTTAAGCCTCAAGCTCCCGTCACTGACTATAGATTTGAAGTGACTGGACTGACTGAAGAACACCTTAAAGATGGGATG CCGCTCCAGGAAGTCAAAGATAGAATTTTGGACATTTTGTGCAATGGAGAGTCAGTTGGAAAAGCAAGATCAGATGGTGGAAAAGCTAGGCTGCTTGTGG GTCACAGCTTGGAGTATGATCTGGATTGCCTCAGAATTAGATATCCTCCTAACTTGTTGAGGGACACTGCGAAATACCGTCCACTGTTGAAAACCAACCT GGTTAGCTACTCACTCAAGTACGAGATTCAGAAAGAGAAGCACGACTCTTACGAAGACTGCCTCTCCAACATGCGACTGTACAAAAGAATACGTAGCTTA GATCATCATCATCATCATCATAATAGTGAGGTAGAACAACAATGCAAGGGTATTCTGAAAAAGAGAGATGGATATGAGTCTTGGAAGCTGAGGGAACTGG AGGCTATGTCACCAGATGAGCTGTACCAAATATCAACCTCAAACTACATGTGTTGGTGTCTGGATTTGGGGCAACACCAGCAGTAG
AA sequence Show only first row Show all	>Lus10042687 pacid=23181707 polypeptide=Lus10042687 locus=Lus10042687.g ID=Lus10042687.BGIv1.0 annot-version=v1.0 MDYEHDPPSKTPTKRHRCSACFKQFKRKDHLVQHMKISYHSHHQPKCGICLKHCKSFQSLREHLAGSLPRSSCSKIFTDRGCDLCLNVFDDANDLSNHRE KCRLSAPSPLATKISSTDALMYGRGSAGGKCVGGNKKAIAIDCEMVGGGDDGTIDLCGQVCLVDEDENIVFHSYVKPQAPVTDYRFEVTGLTEEHLKDGM PLQEVKDRILDILCNGESVGKARSDGGKARLLVGHSLEYDLDCLRIRYPPNLLRDTAKYRPLLKTNLVSYSLKYEIQKEKHDSYEDCLSNMRLYKRIRSL DHHHHHHNSEVEQQCKGILKKRDGYESWKLRELEAMSPDELYQISTSNYMCWCLDLGQHQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48100	C2H2ZnF		Exonuclease family protein (.1...		Lus10042687 [exp]	0	1
AT5G38380			unknown protein		Lus10009167 [exp]	6.0	0.8152
AT2G37990			ribosome biogenesis regulatory...		Lus10019422 [exp]	9.0	0.8267
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10006910 [exp]	13.8	0.8156
AT1G15420			unknown protein		Lus10030351 [exp]	14.6	0.8251
AT2G36740		ATSWC2	sequence-specific DNA binding ...		Lus10009576 [exp]	18.1	0.7666
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10023341 [exp]	28.9	0.8181
AT4G15640			unknown protein		Lus10033970 [exp]	29.2	0.8229
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10038239 [exp]	33.7	0.7855
AT2G33820		ATMBAC1	Mitochondrial substrate carrie...		Lus10013998 [exp]	35.0	0.7961
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10014632 [exp]	35.8	0.7875

Compare expression of checked genes

Lus10042687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.