Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29320 1381 / 0 PHS1 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) AT3G46970 569 / 0 ATPHS2, PHS2 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037093 [exp] 1333 / 0 AT3G29320 1378 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10036892 [exp] 1109 / 0 AT3G29320 1108 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10029643 [exp] 1070 / 0 AT3G29320 863 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10001200 [exp] 998 / 0 AT3G46970 1377 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Lus10029644 [exp] 600 / 0 AT3G29320 538 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10007546 [exp] 53 / 7e-07 ND 63 / 1e-10
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160200 [exp] 1377 / 0 AT3G29320 1397 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Potri.009G041800 [exp] 1039 / 0 AT3G46970 1445 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Potri.004G123600 [exp] 744 / 0 AT3G29320 727 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Potri.004G048600 [exp] 427 / 4e-133 AT3G46970 842 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Potri.008G093901 [exp] 123 / 4e-33 AT3G29320 131 / 8e-37 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00343 [flax] [poplar] Phosphorylase Carbohydrate phosphorylase
Representative CDS sequence Show only first row Show all	>Lus10042688 pacid=23181859 polypeptide=Lus10042688 locus=Lus10042688.g ID=Lus10042688.BGIv1.0 annot-version=v1.0 ATGGTGATGACGACGGCGACTGCTACATCTTCAGCGCCTCATCCGATTTCAGTTTTTAAATTGATCGATTTCGGTTCAGCGAGTGCCAGTTCGAAGTCGA GATCGAAGTTTTTCTTCACTCGCGCCTTTAACTCTCGCCCATTCCGCAGGTCCTTCTTCGTCAGCAACGTCTCGAGCGAGCATTCTCGGCGCTTCAATCT TTCAGCTGCCGTCCAACAAGCAGATTATGCGAGTCGAAATGTAGCCTTGAAATATGTACTCTCTGGAATGATACGGATTCCGAGCAGTCTCGAGAATGAT ACGTTTTCCGACGCTGAGATGATCAAATGTGATCAAGTTGATTTGAAAGCTGGCCACATCCGTGGCTCCCAGTTCCCCGAAACCTGCAAATCCTCGGAGA ATCGGCTTCCTCTCTCAGAAGATGCTTCATGTATCGCATTTAGTATCAAATACAATGCAGAATTCTTACCATCATTTTCCCCTGGGCAGTTGGAACTTCC AAAAGCTTATTTGGCAACAGCACAAATTGTTCGGGAATCTCTTATAAAAAACTGGAATGCGACATACGACCTCTATGAGAGGCTGGATGTAAAGCAGGCT TACTATTTGTCGATGGAATTTTTGCAGGGTAGAGCGCTGTCGAATGCCATTGGTAATTTAGAGCTGACCGGTCCTTATGCAGAGGCTTTGTCAAAGCTCG GACACAACTTAGAAAATGTGGCTTCCCAGGAGCCGGATGCTGCACTTGGAAATGGAGGTCTTGGGCGACTGGCTTCTTGCTTTTTGGATTCTCTAGCAAC TTTAGACTATCCAGCATGGGGCTATGGACTAAGGTACAAGTATGGATTGTTCAAACAACTGATTACAAAAGATGGTCAAGAAGAAGTGGCTGAAAATTGG CTTGAGATGGGAAATCCTTGGGAAATAGTGAGGAACGATGTCATATATCCTGTGAAGTTTTATGGCAAGGTGGTTTCCGATGCAGATGGTAAAAGACACT GGATTGGTGGAGAAGACATAAATGCTGTTGCCCATGATGTCCCAATACCAGGATATAAGACAAGAACCACGATTAACCTACGACTTTGGTCAACTAAAGC CTCATCAAATGATTTTGATTTGGATGCTTTTAATGATGGAGACCACACAAAAGCATACAAAGCCCTAGCAGATGCTGAGAAGATTTGCCATGTTCTTTAC CCTGGAGATGCCTCGGAGGAGGGGAAGATTCTCCGATTAAAGCAACAATATTCATTGTGTTCTGCTTCTCTCCAAGATATTATTGCACGGTTTGAGAGTA GATCAGGCTCTAATATTAACTGGGGAAATTTTCCTGAGAAAGTAGCAGTTCAGATGAACGATACTCATCCAACGCTCTGCATCCCCGAGCTGATGCGAGT TTTGATGGACTTGAAAGGTTTAAACTGGAATAATGCCTGGAACATCACCAAGAGAACTGTGGCGTATACAAACCATACAGTTCTACCAGAAGCCTTGGAG AAGTGGAGTTTAGAGCTTATGCAGAAACTGCTACCTCGACACGTTGAGATCATAAAAACTATTGATGAACAGCTTATAAGCGAGATTGTTTCGGAGTATG GTAAAGAAGACACAGAAATGCTGGAGAAGAAACTAAAAGAAATGAGAGTGTTGGAAAATGTTGATCTGCCCGAGATCTTTGCTGATTTAATTGTAAAACC TCAGGAAACCTCTGTTGATGTTTCCATTATAAAACTAAAAAAACCTCCTGCAGAAACTGAATCAGTTTATGTAAGGGATGAATCAGAGGATGGTTGCCCT GAGGAGGAAGAGGAGGAGGAGGAGAAGGTTGTGAAACCACCACCTCCAAAAATGGTTCGCATGGCTAATCTTTGTGTTGTCGGTGGTCATGCTGTAAATG GAGTTGCTGAAATACACAGTGAAATCGTGAAGGACGAAGTCTTTAACTCTTTTTACAAGTTGTGGCCTAAGAAATTCCAAAACAAGACGAATGGGGTTAC ACCAAGAAGGTGGATCCGTTTCTGCAATCCTGCGTTGAGCAAAATTATTACTGAGTGGACTGGCTCTGAAGATTGGGTGTTGAACACTGAAAGACTAGCA GAATTAAGGAAGTTTGCAGATAACAAGGATCTCCAAAATCAGTGGAGGTCAGCAAAAAGGGAAAACAAAATGAAGGTTGTCTCATTCATCAAAGAAAAGA CTGGGTATACTGTGAGCCCTGACTCAATGTTTGATATCCAGGTGAAGCGCATTCATGAGTACAAGCGACAGTTGCTGAATATTTTAGGCATTGTTTACCG CTACAAGAAGATGAAAGAAAGTACTGTGGAAGAAAGGAAAAACATGTATGCTCCTCGAGTATGTATATTCGGGGGGAAAGCGTTTGCTACATATGTTCAA GCAAAGAGAATTGTGAAGTTCATAACAGATGTTGGTGCTACCATTAATCACGACCCTGAGATTGGTGACTTGTTGAAGGTGATATTCATCCCTGATTACA ATGTCAGTGTTGCTGAATTGCTTATTCCAGCGAGTGAGCTGTCACAACATATTAGCACTGCGGGTATGGAAGCAAGTGGAACCAGCAATATGAAGTTCGC AATGAATGGATGTGTTTTAATAGGGACTTTAGATGGGGCTAATGTCGAAATAAGACAAGAGGTTGGAGAAGACAATTTCTTCCTCTTTGGTGCTCGAGCA AACGAGATTGCAGGATTGAGGAAGGAAAGAACCGATGGCAAGTTCATTGCGGACCCACGATTCGAAGAAGTGAAGGATTATGTGAGGAGTGGTATATTTG GTGGTAACAATTACGACGAACTGCTTGGATCGTTGGAAGGGAATGAAGGGTTTGGTAGGGGTGATTATTTCCTTGTAGGCAAGGATTTTCCTAGCTACAT TGAATGCCAGGATGAGGTGGACTTGGCATATCGAGATAAAAAGAGATGGACGAGAATGTCGATCCTGAATACGGCAGGCTCGTACAAGTTCAGCAGCGAC AGAACGATCCACGAGTATGCCAAAGATATTTGGAACATCAAAGCTGTTAATGTCGAGTAA
AA sequence Show only first row Show all	>Lus10042688 pacid=23181859 polypeptide=Lus10042688 locus=Lus10042688.g ID=Lus10042688.BGIv1.0 annot-version=v1.0 MVMTTATATSSAPHPISVFKLIDFGSASASSKSRSKFFFTRAFNSRPFRRSFFVSNVSSEHSRRFNLSAAVQQADYASRNVALKYVLSGMIRIPSSLEND TFSDAEMIKCDQVDLKAGHIRGSQFPETCKSSENRLPLSEDASCIAFSIKYNAEFLPSFSPGQLELPKAYLATAQIVRESLIKNWNATYDLYERLDVKQA YYLSMEFLQGRALSNAIGNLELTGPYAEALSKLGHNLENVASQEPDAALGNGGLGRLASCFLDSLATLDYPAWGYGLRYKYGLFKQLITKDGQEEVAENW LEMGNPWEIVRNDVIYPVKFYGKVVSDADGKRHWIGGEDINAVAHDVPIPGYKTRTTINLRLWSTKASSNDFDLDAFNDGDHTKAYKALADAEKICHVLY PGDASEEGKILRLKQQYSLCSASLQDIIARFESRSGSNINWGNFPEKVAVQMNDTHPTLCIPELMRVLMDLKGLNWNNAWNITKRTVAYTNHTVLPEALE KWSLELMQKLLPRHVEIIKTIDEQLISEIVSEYGKEDTEMLEKKLKEMRVLENVDLPEIFADLIVKPQETSVDVSIIKLKKPPAETESVYVRDESEDGCP EEEEEEEEKVVKPPPPKMVRMANLCVVGGHAVNGVAEIHSEIVKDEVFNSFYKLWPKKFQNKTNGVTPRRWIRFCNPALSKIITEWTGSEDWVLNTERLA ELRKFADNKDLQNQWRSAKRENKMKVVSFIKEKTGYTVSPDSMFDIQVKRIHEYKRQLLNILGIVYRYKKMKESTVEERKNMYAPRVCIFGGKAFATYVQ AKRIVKFITDVGATINHDPEIGDLLKVIFIPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCVLIGTLDGANVEIRQEVGEDNFFLFGARA NEIAGLRKERTDGKFIADPRFEEVKDYVRSGIFGGNNYDELLGSLEGNEGFGRGDYFLVGKDFPSYIECQDEVDLAYRDKKRWTRMSILNTAGSYKFSSD RTIHEYAKDIWNIKAVNVE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10042688 [exp]	0	1
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10012157 [exp]	9.4	0.9322
AT3G51930			Transducin/WD40 repeat-like su...		Lus10024180 [exp]	11.7	0.9257
AT1G34130		STT3B	staurosporin and temperature s...		Lus10041985 [exp]	13.0	0.9238
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10008647 [exp]	14.2	0.9261
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10029311 [exp]	16.2	0.8627
AT2G04400			Aldolase-type TIM barrel famil...		Lus10006354 [exp]	17.7	0.9272
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Lus10011932 [exp]	20.5	0.9176
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10037403 [exp]	22.6	0.9256
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10042255 [exp]	23.7	0.9246
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10014330 [exp]	24.7	0.9232

Compare expression of checked genes

Lus10042688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.