Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48110 309 / 9e-93 MED33B, REF4 reduced epidermal fluorescence 4 (.1) AT3G23590 248 / 7e-71 MED33A, RFR1 REF4-related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029646 [exp] 489 / 2e-159 AT2G48110 1424 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10027998 [exp] 382 / 2e-119 AT2G48110 1370 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10000663 [exp] 375 / 1e-116 AT2G48110 1484 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10004434 [exp] 290 / 1e-85 AT3G23590 1722 / 0.0 REF4-related 1 (.1) Lus10034021 [exp] 288 / 4e-85 AT3G23590 1721 / 0.0 REF4-related 1 (.1) Lus10041229 [exp] 274 / 8e-80 AT3G23590 1595 / 0.0 REF4-related 1 (.1) Lus10028033 [exp] 0 / 1 AT2G48120 91 / 6e-22 pale cress protein (PAC) (.1), pale cress protein (PAC) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G138400 [exp] 350 / 3e-107 AT2G48110 1424 / 0.0 reduced epidermal fluorescence 4 (.1) Potri.002G215600 [exp] 343 / 1e-104 AT2G48110 1371 / 0.0 reduced epidermal fluorescence 4 (.1) Potri.008G201600 [exp] 304 / 8e-91 AT3G23590 1682 / 0.0 REF4-related 1 (.1) Potri.016G142500 [exp] 140 / 8e-35 AT3G23590 871 / 0.0 REF4-related 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042689 pacid=23181788 polypeptide=Lus10042689 locus=Lus10042689.g ID=Lus10042689.BGIv1.0 annot-version=v1.0 ATGTTTCTCAAAGATTGCATGGACGGGTCACCATTGGTTGTAGTTTGTGCTATACAGAATCTACTTGGGCTGGTTACAGCTTTGCCGGCCTTGAATGGTT GTACATGGCATGACACCATTTTGGGACTATGCTGCTTTACGGCTTGTTCAAAGGGGAGTGAACCGGTTGATGACACTGCATGCCACCCCACTGCTCAAAT CAAAGAGAAACAGGGCCAAGGCACATGCCGTCAAGGTCTCATTACCGCGTTACAGTCACTGGGTGATTATGAAGCCTTGCTCACTCCACCTCATTCTATT ATTTCCATGGCAAATCAGGCTGCTGCCAATGCGGTAGTATCTGTTTCCGGCCTTGCTGCTAATAATGGCTATTATGAAAACTTGAGCATGAATGACATGC CGCTTGATTGTTCGGGTAACCTGAGGCATCTAATAGTTGAAGCTTGTATTGCAAGAAATGTGTTGGACACATCCGCATACTTGTGGCCAGGCTATGTTGG AGTGTGCACTAGTCACGTTCCTAGCCAAATGCATGGCTGCTTACTAGAGAAAATATTTGAGATTGCTGTCAATGTCTCCGATGATGAGAAGATATCAGCT GCTACCTTATTGTGTGGGGCATCTCTTGTTCGTGGTTTGAATGTGCAGGCATTGCAGGAAACTCAATTTGATTCACCACTAACAAAACACATAACAGATG TGTGTGTTCCGGAGGCTCCTTTGCTTGCAGGTGCACTGATGCCCATCTGTGAGGTCTTTGGATCAGCTGCTCCTGAAACCTCCTGGACTCTTCCAACAGG GGAAGAACAAATGACTAAGGATTTGTACACGCTAGGCATGGCTCCAACCGACATTTCCAGCACTAGCGGCGTCGGTGCCCTCCTAGGCCACGGTTTCGGC TCTCGCCGTTCCGGCGGTACTATATCCCCGGTCGCCCCCGGGATACTCTACCTAAAAGTGCACCGAGCAATCAGGGATGTCATGTTGATGACAGAACAAA TCCTGTCTCTTCTTATGGATTCCGTCAGAGAGATTGCAAGCAGTGGCTTACCCAAAGACCCTGCATCAAAATTGAGAAACACCAAGCACGGAATAATGAG GTATGGCCAGCTCTCCATAGCCGGCGCGATGAGACGTCTCAAACTCGCAGCATCACTCGGAGCTTCGTTGGTGTGGATTACAGGCGGGCCGAATTTAGTT CAGTCCCTGATGAAAGAAACCTTACCTTCTTGGTTCATATCAGAACACAGTGAGGAGGAGTCCGGAAGAACTAGTGAGATGGTTGCCACGCTGGGAGGGT ACGGCCTGGCATATTTTGCATTGATGTGCGGGACATTTGCGTGGGGGGTTTTTTCTACGTCTGCAGCATCGACAAGACGGCCAAAAGTTTTGTCGGCACA CTTGGAGTTTCTGGCGAGTGCATTGGACGGGAAAGTATCACGGGGTTGTGACTGGAAGACGGCGCAGGCATACGTAACCGTGCTTGTGGGGCTAATGGTG GCTTGCACGCCGAAATGGGTGAAAGAAGTGGACGCGGGTACACTTAAGAGGCCTAGCAAAGGGTTGAGCCAGCTGAACGAGACGGAACTCGCGCTGTCCT TGTTGGGATGTGGTGGGGTTGGCGCCATGGGTAGAGGACTTGCCGGCGAGATATTGTTGGAGGGCAGATCATGTGGCTCTTGCGAATTCCATTATTTTGA TTGA
AA sequence Show only first row Show all	>Lus10042689 pacid=23181788 polypeptide=Lus10042689 locus=Lus10042689.g ID=Lus10042689.BGIv1.0 annot-version=v1.0 MFLKDCMDGSPLVVVCAIQNLLGLVTALPALNGCTWHDTILGLCCFTACSKGSEPVDDTACHPTAQIKEKQGQGTCRQGLITALQSLGDYEALLTPPHSI ISMANQAAANAVVSVSGLAANNGYYENLSMNDMPLDCSGNLRHLIVEACIARNVLDTSAYLWPGYVGVCTSHVPSQMHGCLLEKIFEIAVNVSDDEKISA ATLLCGASLVRGLNVQALQETQFDSPLTKHITDVCVPEAPLLAGALMPICEVFGSAAPETSWTLPTGEEQMTKDLYTLGMAPTDISSTSGVGALLGHGFG SRRSGGTISPVAPGILYLKVHRAIRDVMLMTEQILSLLMDSVREIASSGLPKDPASKLRNTKHGIMRYGQLSIAGAMRRLKLAASLGASLVWITGGPNLV QSLMKETLPSWFISEHSEEESGRTSEMVATLGGYGLAYFALMCGTFAWGVFSTSAASTRRPKVLSAHLEFLASALDGKVSRGCDWKTAQAYVTVLVGLMV ACTPKWVKEVDAGTLKRPSKGLSQLNETELALSLLGCGGVGAMGRGLAGEILLEGRSCGSCEFHYFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10042689 [exp]	0	1
AT3G49142			Tetratricopeptide repeat (TPR)...		Lus10027562 [exp]	2.0	0.7071
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10011604 [exp]	5.3	0.6929
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10007943 [exp]	20.9	0.6470
AT5G04050			RNA-directed DNA polymerase (r...		Lus10036278 [exp]	25.9	0.6720
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024772 [exp]	37.3	0.6060
AT3G49142			Tetratricopeptide repeat (TPR)...		Lus10027561 [exp]	40.9	0.6188
AT5G01910			unknown protein		Lus10035364 [exp]	41.2	0.6159
AT1G49480	B3	REM19, RTV1	related to vernalization1 1 (....		Lus10009214 [exp]	62.3	0.6118
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10010853 [exp]	74.9	0.5362
AT5G02440			unknown protein		Lus10000246 [exp]	78.7	0.5863

Compare expression of checked genes

Lus10042689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.