Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63070 192 / 2e-49 Tudor/PWWP/MBT domain-containing protein (.1) AT2G48160 184 / 7e-47 Tudor/PWWP/MBT domain-containing protein (.1) AT5G23150 130 / 4e-30 HUA2 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) AT5G08230 104 / 2e-22 Tudor/PWWP/MBT domain-containing protein (.1) AT5G40340 47 / 0.0001 Tudor/PWWP/MBT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028004 [exp] 716 / 0 AT2G48160 371 / 5e-109 Tudor/PWWP/MBT domain-containing protein (.1) Lus10040980 [exp] 130 / 6e-30 AT5G23150 480 / 1e-145 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10013433 [exp] 127 / 4e-29 AT5G23150 466 / 2e-140 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10017398 [exp] 120 / 6e-27 AT5G23150 432 / 5e-128 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10010197 [exp] 117 / 5e-26 AT5G23150 445 / 2e-132 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10032141 [exp] 52 / 4e-06 AT5G40340 187 / 3e-48 Tudor/PWWP/MBT superfamily protein (.1) Lus10014546 [exp] 50 / 2e-05 AT5G40340 184 / 2e-47 Tudor/PWWP/MBT superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G138700 [exp] 606 / 0 AT3G63070 400 / 5e-117 Tudor/PWWP/MBT domain-containing protein (.1) Potri.007G071600 [exp] 135 / 1e-31 AT5G23150 485 / 1e-146 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Potri.005G092700 [exp] 129 / 7e-30 AT5G23150 478 / 2e-144 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Potri.004G130600 [exp] 54 / 9e-07 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1) Potri.012G081500 [exp] 48 / 5e-05 AT3G48190 131 / 2e-30 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00855 [flax] [poplar] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Lus10042690 pacid=23181849 polypeptide=Lus10042690 locus=Lus10042690.g ID=Lus10042690.BGIv1.0 annot-version=v1.0 ATGGCGCCTAGCCGGAGAAGAGGCGCCGGCAGAGGCTCGGCAGCTGCCGCCCGTCGCCAATGGAAAGTCGGTGACCTTGTCCTTGCTAAACTCAAAGGTT TTCCTGCCTGGCCTGCCACGGTGAGCGAGCCACAGAAATGGGGTTATAAATCGGATTTGAAGAGAATACTTGTACAATTTTTTGGGACTCAGCAAATAGC TCTCTGCTATGCTGCTGACATTGAACCATTTACGGAAGAGAAAAAGCGGTCGCTGTTGACAAAACGGCAAGGGAAGAGTGCAGATTTTGTTCGTGCTTTG GAAGAGATAATTGATAGCTTTGACAAGGCAAAGAAACAAGATCATGTTGATTTCAGTTCTGGTGAAGCACTTGTCCAGAATGAGACGACTGGGGCGGCAG TTATGCAGGTAGAAACTTTAACTTTCAGAAAAGATCCTACTGTTTCACACCATAATAGCACAGATTTTCCACCCGGTTTTTCTTCCGATGACAAAGAATC TTCGCATGAGAAGCCTGTTAGTAATTTAGAAAAGCCTATTATGGAAACTTATACGTCAAGAAAAAGGACTGGAGGTTCACGATCTAGGAAATGTGCCCCT CAACAGAAAGTACCATCACCAGAAACTTCCAAAAGCTTGCCTCAGTTGGCTTCTGTAAGTGTCCAAAACTCTGCATCATTGTCGCAGAGTTCTACAGAAA GTGTAGGGAATTTATTGAGTGATAGAACTAGAGAAGGGTCAGTTTGGAGTACCAAATGTATCAGAAAGACGCCTGATGCTGCAGAAGGTGAAAACTGGGA TACTTCTGCTTTTGTTTCAAATGACAGCATTGAGTATGATGTGTCTGAAATAATAACAGCTGATTCTGATTCCTGTGGCTTAAATGATGTTGGCACTGTC GATAGTGGCTACAAACAATATTCTGTACCAGATAATGGTATAATTGTGGAAGTTGGAGCAAATATTACTGGCCTGAATTTGCAACTTATGTCTGAAAATG GAAAGGAAAGTAAGGGAGATGGAGATGAGCATCTACCACTTCTTAAAAGAGCCAGAGTTAGAATGGGGGGAGTATCATCATCGAGAGATGTGACTGTAGA GTTATCTGTTAATAAAGTGGAGCAGGTTACTTCATCTGTGAACTCTAATGTTCATTGTCCAGGAAGTATAGATTTGGCATTAAATGAGACGTCAAATACA ATCCCTGGAGGTAAGATACTGCTCTCAAAGGTGAGTGATAACCAATGCTTTGGTCATCTTGCTGATGGTGAATCTGCATTGCCTCCGAGTAAACGTCTTC ATCGTGCACTTGAGGCAATGTCTGCAAATGTTGCTGAAGAGACATCAACCAGGAAACAATGTACCAATGATGTTGCACCTGGGGATCTTGAAAAAATAAA GATAGTGGAGCAAAGCCAGGATTCTCTCTGCTATAGAGTTCCTGTTTTACGTTTGAGTTGTAATAAGGCTTTAGAGGTAGGTATGGGATCTTCACCTAGT GCAGATAGTTCCACTAAGACGATTGACATTTCTTATGGTAATGAAGCGTCCAAAAACGAGTTGGCAGAGAATATGGAGCATGGAAATGATATGGACATTC TGGCTCTTGAACAAAATGCTGACCGTGCTGCTCCTGTTGAAGAACAAATTTCGGGAAGTGTCATGCTTGTTGCTGAGAAGCAACCTGCTAGTCTGGAATC ATATCAGATACCTTTAGAACAGCAGCAGCTGTTTATAGCTAAAGATGGAGAACCTGAAAACCAACAATCAAATGATGAGAGGACTGCTACTGGTGCTCTC CATGTCGTTGAAGTTGTTGAAGGTAATATGAAAAAATTGTGTCAGGGTACTGCAGATGACACTGAGTGTGATAATGCTGAGCCACAGATGTCCATACTTG ACGATAATCATCCAGTGGATGGAGAGCACAAACCAGAAAGGGATGATCAGATGCAGAAGGAAGCAAGTGGCATTACTTTTTCAGATGACTACTGTTCTTA CAAGGATGCTTTGCCCATGCAACCAGCTATAGGCCAAGCTGTTGAAAAATCTCCTGAAGGGATGTCCCCGGCTACTACCTCTGTGTGTCATATGTCTACT TCAGAAAGTGTTAATTTTAATCAGAACAGTGGTAGTTCAAGTCCAAAGAATGATTTAAATGAGAGGAGATTCATTGGCAGTACGCCTACTGATGAGGAGA AGATTGACTCTGCAGCACCTCAGAGACCAAAATCCGTGGGAATATATAGCAATGCAGAAGTACGTGCTGCTTTGTCATCTTTCGAAAGAATGCTTGAATT GTTAACAAGGACGAGGGAGAGCATAAGTCATGCAACTCACATGGCAATGGACTGTTCTAAGTTGGGTGCCTCTAGGAAGATTATGGATATTCTGGCTTGT AATTTGGAACATGAATCGAGTCTGCACAGAAGGGTGGACCTATTCTTCCTTGTGGATTCCATTGCTCAATCCTCTCGAGGCTTTAAAGGTGTTGTTGGTG CATTCCCTTCTGCTGTTCAAGCAGTGTTGCCACGGCTTTTATTGGCTGCTGCCCCTCCTGGAATTTTGGCTAAAGAGAAGAGAAGGCAGTGTTTAAAGGC AAGCCAGGAGGCCTTCAACATACGAATTCTTCCTGGATCCATTTTAAGGCAGCATATCCGGGATTTAGAGTCACTTTGCACATCATCTTCTGCTGTATAC TCTCGCCGGTCAGCAAGAACAGAAAGGTCTCTGGATGATCCTATTAGAGAGATGGAGGCAATTCAAGTTTTCAGCTTCCTGGACTGTGTATGCCGCTCAT GCTCAAGGATGAAGAAGAAGAAGGAAGTGATTCAGATGGAGGCAGTTTTGAGGCAGTCACTAGGCACTCCGGAACAACAATGTGAATCTTTACCTGCCAC TGAAAAACACACACATATATTGCAGGATGTAGATGGAGAACTTGAAATGGAGGATGTGGCTCCCTTTTGTCAAGAGGAAATGAGCAAGGATGATCTGGCA GTTAATCGTATACAGACTTCACATGGCCAGTTCGAACAACATTTTCCATCACGATATGCTCCTCCCTTGGCACAGGTGGTGCCACCATCATCTCCTCCCT TGCCCTCATCTCCACCTCCGTCAATGCCACCTCCTCTCCCAACTATTGCCCAACCATCCTGTGCAACCCGTGATGCCTATGTTGATAGTCTTGATGCAAG GCCTTCTAGGAATGCACATGTTCAGAATTTTCAAGGTGGCCCTCGAATGAACCCGTCAGCATCCAACGGAGTGCATTGCCGGCCTGAATGTAGAGATCCA GTGGACATGCAGCTGTATGATACATGTAAAACTGGGCGTGCAATGAACAATGGCCATCACATAGATGGATCAAGCTATCGTCACAGGTCGCATCCTCCGA GACCACAACACCACCACCTTCCACCACCTAACCATTTGTCTTGCACACACGGAGGCCAGCATGTCAAATCCAGGAGGGAAACACCACCACCGCCATCATC ATCATACACGCATAGGTACCACTCATCACACGATCCTGATAACGGGAGATTTTACAACAACCACGACAGAATGATACCCGATCCATATGAGTATGGTGAG AACTGGAGATATTATGAACATCCTTATTCGGGTCGTCGATATCCTCAAAAATCCAAGTCGCCATATGGTCCACCTTTGCCTTACGGGAGGCCCTCACGAG AACCAACTAGGTTGCCACATCATCGGGGATGGGAACATCATCCTCCCAGGGGAATGCATCACAGGGAATTCATGCATTCTCAAGGTCCAGTTCCAGTGTC AAATAGAGGTATGTCTAAACTAACTGCCCCCAACTTCGACTATAAAGCAGCAGATTCTCATGTCGGTTAA
AA sequence Show only first row Show all	>Lus10042690 pacid=23181849 polypeptide=Lus10042690 locus=Lus10042690.g ID=Lus10042690.BGIv1.0 annot-version=v1.0 MAPSRRRGAGRGSAAAARRQWKVGDLVLAKLKGFPAWPATVSEPQKWGYKSDLKRILVQFFGTQQIALCYAADIEPFTEEKKRSLLTKRQGKSADFVRAL EEIIDSFDKAKKQDHVDFSSGEALVQNETTGAAVMQVETLTFRKDPTVSHHNSTDFPPGFSSDDKESSHEKPVSNLEKPIMETYTSRKRTGGSRSRKCAP QQKVPSPETSKSLPQLASVSVQNSASLSQSSTESVGNLLSDRTREGSVWSTKCIRKTPDAAEGENWDTSAFVSNDSIEYDVSEIITADSDSCGLNDVGTV DSGYKQYSVPDNGIIVEVGANITGLNLQLMSENGKESKGDGDEHLPLLKRARVRMGGVSSSRDVTVELSVNKVEQVTSSVNSNVHCPGSIDLALNETSNT IPGGKILLSKVSDNQCFGHLADGESALPPSKRLHRALEAMSANVAEETSTRKQCTNDVAPGDLEKIKIVEQSQDSLCYRVPVLRLSCNKALEVGMGSSPS ADSSTKTIDISYGNEASKNELAENMEHGNDMDILALEQNADRAAPVEEQISGSVMLVAEKQPASLESYQIPLEQQQLFIAKDGEPENQQSNDERTATGAL HVVEVVEGNMKKLCQGTADDTECDNAEPQMSILDDNHPVDGEHKPERDDQMQKEASGITFSDDYCSYKDALPMQPAIGQAVEKSPEGMSPATTSVCHMST SESVNFNQNSGSSSPKNDLNERRFIGSTPTDEEKIDSAAPQRPKSVGIYSNAEVRAALSSFERMLELLTRTRESISHATHMAMDCSKLGASRKIMDILAC NLEHESSLHRRVDLFFLVDSIAQSSRGFKGVVGAFPSAVQAVLPRLLLAAAPPGILAKEKRRQCLKASQEAFNIRILPGSILRQHIRDLESLCTSSSAVY SRRSARTERSLDDPIREMEAIQVFSFLDCVCRSCSRMKKKKEVIQMEAVLRQSLGTPEQQCESLPATEKHTHILQDVDGELEMEDVAPFCQEEMSKDDLA VNRIQTSHGQFEQHFPSRYAPPLAQVVPPSSPPLPSSPPPSMPPPLPTIAQPSCATRDAYVDSLDARPSRNAHVQNFQGGPRMNPSASNGVHCRPECRDP VDMQLYDTCKTGRAMNNGHHIDGSSYRHRSHPPRPQHHHLPPPNHLSCTHGGQHVKSRRETPPPPSSSYTHRYHSSHDPDNGRFYNNHDRMIPDPYEYGE NWRYYEHPYSGRRYPQKSKSPYGPPLPYGRPSREPTRLPHHRGWEHHPPRGMHHREFMHSQGPVPVSNRGMSKLTAPNFDYKAADSHVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10042690 [exp]	0	1
AT1G29370			Kinase-related protein of unkn...		Lus10007339 [exp]	2.8	0.8695
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Lus10041301 [exp]	3.6	0.8821
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038007 [exp]	5.1	0.8765
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10006650 [exp]	8.3	0.8494
AT1G09050			unknown protein		Lus10004495 [exp]	8.8	0.8464
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10027628 [exp]	10.5	0.8320
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10015446 [exp]	10.6	0.8762
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10018357 [exp]	11.0	0.8740
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Lus10009636 [exp]	11.0	0.8488
AT2G21630			Sec23/Sec24 protein transport ...		Lus10043359 [exp]	12.4	0.8625

Compare expression of checked genes

Lus10042690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.