Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50260 320 / 6e-110 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT5G45890 318 / 4e-109 SAG12 senescence-associated gene 12 (.1) AT3G48340 305 / 6e-104 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT4G35350 294 / 2e-99 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G20850 293 / 4e-99 XCP2 xylem cysteine peptidase 2 (.1) AT3G19390 294 / 2e-98 Granulin repeat cysteine protease family protein (.1) AT3G48350 291 / 4e-98 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1) AT4G36880 285 / 6e-96 CP1 cysteine proteinase1 (.1) AT5G43060 288 / 1e-95 Granulin repeat cysteine protease family protein (.1) AT2G27420 280 / 3e-94 Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029649 [exp] 491 / 3e-177 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Lus10042693 [exp] 479 / 1e-172 AT5G45890 379 / 1e-131 senescence-associated gene 12 (.1) Lus10029658 [exp] 476 / 2e-171 AT5G45890 383 / 4e-133 senescence-associated gene 12 (.1) Lus10006542 [exp] 367 / 2e-128 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10003275 [exp] 363 / 8e-127 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10020722 [exp] 362 / 2e-126 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10026362 [exp] 362 / 2e-126 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10042295 [exp] 359 / 2e-125 AT5G45890 402 / 7e-141 senescence-associated gene 12 (.1) Lus10026073 [exp] 359 / 3e-125 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G064900 [exp] 367 / 2e-128 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 355 / 2e-124 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 354 / 2e-123 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 347 / 2e-120 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 346 / 3e-120 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.013G118400 [exp] 346 / 3e-120 AT5G45890 378 / 2e-131 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 345 / 9e-120 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 343 / 7e-119 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 343 / 7e-119 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 342 / 8e-119 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10042691 pacid=23181732 polypeptide=Lus10042691 locus=Lus10042691.g ID=Lus10042691.BGIv1.0 annot-version=v1.0 ATGCCTGCCAAAACTGGATACAAGAAGACGGTCTCCGATCTCGGATCTTCGTTGTCATTCAAGTACCAGAATGTGAGCTCAGTGCCAGACACCATGGATT GGAGAAATAAAGGAGCTGTTAATCCCATTAAAGATCAAGGCCAATGCGGATCCTGTTGGGCATTCTCTGCTGTGGCAGCAGTGGAAGGACTAATGAAGAT CTCAACAGGGAAGTTGGTATCGCTTTCGGAGCAAGAACTGATCGACTGCGACAGAACGAGTAACGACCAAGGATGCAACGGAGGATTCATGGACGACGCT TTTCAATACGTGAAGAGCAAAGGTCTCACAACCGAATCCAACTACCCTTACACGGCAGCAGATGGAACTTGCAACGCGGTCAAGACAAACCCTTCTTCGG CCAAGATCAACGGTTACGAGGATGTACCTGCCAACGATGAGAAATCGTTGCTTAAAGCTGCGGCTAACCAGCCCATCTCTGTGGCCATTGATGCCAGTGG CTCTGCTTTCCAGTTCTACTCGAGTGGAGTGTTCACCGGAGATTGTGGCACGGATTTGGATCATGGTGTGGCTGTCGTAGGGTATGGAACGAGTGGCGAT GGTTCGAAGTACTGGCTGGTGAGGAACTCGTGGGGGACGAGCTGGGGAGATGGAGGGTACATCAAGATGCAGAGGGACGTTGGTGCTAAAGCAGGGCTCT GTGGCATTGCTATGTCTGCTTCGTATCCCACTGCCTAA
AA sequence Show only first row Show all	>Lus10042691 pacid=23181732 polypeptide=Lus10042691 locus=Lus10042691.g ID=Lus10042691.BGIv1.0 annot-version=v1.0 MPAKTGYKKTVSDLGSSLSFKYQNVSSVPDTMDWRNKGAVNPIKDQGQCGSCWAFSAVAAVEGLMKISTGKLVSLSEQELIDCDRTSNDQGCNGGFMDDA FQYVKSKGLTTESNYPYTAADGTCNAVKTNPSSAKINGYEDVPANDEKSLLKAAANQPISVAIDASGSAFQFYSSGVFTGDCGTDLDHGVAVVGYGTSGD GSKYWLVRNSWGTSWGDGGYIKMQRDVGAKAGLCGIAMSASYPTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10042691 [exp]	0	1
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10005758 [exp]	1.4	0.7698
					Lus10040835 [exp]	3.3	0.7849
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10029335 [exp]	5.9	0.7231
AT5G45840			Leucine-rich repeat protein ki...		Lus10007281 [exp]	6.2	0.7692
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Lus10006141 [exp]	7.5	0.7516
					Lus10009381 [exp]	14.1	0.7032
AT5G25910		AtRLP52	receptor like protein 52 (.1)		Lus10016112 [exp]	14.5	0.6692
AT5G37150			P-loop containing nucleoside t...		Lus10035775 [exp]	14.7	0.6130
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10003274 [exp]	15.6	0.6219
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10003867 [exp]	15.7	0.6120

Compare expression of checked genes

Lus10042691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.